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Serial Journal Articles (and highly selective conferences):

  1. pdf, Jing Li, Dong Hye Ye, Timothy Chung, Mathias Kolsch, Juan Wachs, and Charles A. Bouman, ``Fast and Robust UAV to UAV Detection and Tracking from Video,'' to appear in {\em Transactions on Emerging Topics in Computing}. doi:10.1109/TETC.2021.3104555

  2. pdf, IEEE explore, arXiv, Soumendu Majee, Thilo Balke, Craig A. J. Kemp, Gregery T. Buzzard, and Charles A. Bouman, ``4D X-Ray CT Reconstruction using Multi-Slice Fusion,'' {\em IEEE Transactions on Computational Imaging}, vol. 7, pp. 448-461, April 2021.

  3. pdf paper and html paper, Philip J. Withers, Charles Bouman, Simone Carmignato, Veerle Cnudde, David Grimaldi, Charlotte K. Hagen, Eric Maire, Marena Manley, AntonDuPlessis, and Stuart R. Stock, ``X-ray Computed Tomography,'' {\em Nature Reviews Methods Primers,} vol. 1, no. 18, 2021.

  4. paper, arXiv, X. Wang, R. D. MacDougall, C. A. Bouman, and S. K. Warfield, ``Model-Based Iterative Reconstruction for Dual Source and Flying Focal Spot Computed Tomography,'' to appear in {\em Medical Physics}, arXiv preprint arXiv:2001.09471, 2020.

  5. paper, Casey J. Pellizzari, Mark F. Spencer, and Charles A. Bouman, ``Coherent Plug-and-Play: Digital Holographic Imaging through Atmospheric Turbulence using Model-Based Iterative Reconstruction and Convolutional Neural Networks'', to appear in the {\em IEEE Transactions on Computational Imaging.}

  6. paper, jpca web site, James R. W. Ulcickas, Ziyi Cao, Jiayue Rong, Charles A. Bouman, Lyudmila V. Slipchenko, Gregery T. Buzzard, Garth J. Simpson, ``Multi-Agent Consensus Equilibrium (MACE) in Molecular Structure Determination'', {The Journal of Physical Chemistry A}, vol. 124, no. 43, pp. 9105-9112, DOI 10.1021/acs.jpca.0c07282, 2020.

  7. paper, TCI, Venkatesh Sridhar, Xiao Wang, Gregery T. Buzzard, and Charles A. Bouman, ``Distributed Iterative CT Reconstruction using Multi-Agent Consensus Equilibrium,'' to appear in the {\em IEEE Transactions on Computational Imaging.}

  8. paper, Rizwan Ahmad, Charles A. Bouman, Gregery T. Buzzard, Stanley Chan, Sizhuo Liu, Edward T. Reehorst, and Philip Schniter, ``Plug-and-Play Methods for MagneticResonance Imaging,'' {\em IEEE Signal Processing Magazine,} vol. 37, pp. 105-116, Jan. 2020.

  9. paper, Zhiqian Chang, Dong Hye Ye, Somesh Srivastava, Jean-Baptiste Thibault, Ken Sauer, and Charles Bouman, ``Prior-Guided Metal Artifact Reduction for Iterative X-Ray Computed Tomography,'' {\em IEEE Trans. on Medical Imaging}, vol. 38, no. 6, June 2019.

  10. pdf Xiao Wang, Venkatesh Sridhar, Zahra Ronaghi, Rollin Thomas, Jack Deslippe, Dilworth Parkinson, Gregery Buzzard, Charles A. Bouman, Samuel P. Midkiff, Simon K. Warfield, ``Consensus Equilibrium Framework for Super-Resolution and Extreme-Scale CT Reconstruction,'' Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2019 (SC19), November 17, 2019.

  11. pdf Rui Yan, Singanallur V Venkatakrishnan, Jun Liu, Charles A Bouman, and Wen Jiang, ``MBIR: A Cryo-ET 3D Reconstruction Method that Effectively Minimizes Missing Wedge Artifacts and Restores Missing Information,'' {\em Journal of Structural Biology}, vol. 206, no. 2, pp. 183-192, May 2019.

  12. pdf Amirkoushyar Ziabari, Jeffrey M. Rickman, Lawrence F. Drummy, Jeffrey Simmons, and Charles A. Bouman, ``Physics-Based Regularizer for Joint Soft Segmentation and Reconstruction of Electron Microscopy Images of Polycrystalline Microstructures,'' {\em IEEE Transactions on Computational Imaging}, vol. 5, no. 4, pp. 660-674, Feb. 2019.

  13. pdf Casey J. Pellizzari, Mark F. Spencer, and Charles A. Bouman, ``Imaging Through Distributed-Volume Aberrations using Single-Shot Digital Holography,'' {\em The Journal of the Optical Society of America A (JOSA-A)}, vol. 36, no. 2, Feb. 2019.

  14. paper Hani Almansouri, Singanallur Venkatakrishnan, Charles Bouman, and Hector Santos-Villalobos, ``Model-Based Iterative Reconstruction for One-Sided Ultrasonic Non-Destructive Evaluation,'' {\em IEEE Transactions on Computational Imaging}, pp. 150-164, vol. 5, no. 1, March 2019.

  15. final and original paper (might be clearer), and CE tutorial slides;
    Gregery T. Buzzard, Stanley H. Chan, Suhas Sreehari and Charles A. Bouman, ``Plug-and-Play Unplugged: Optimization Free Reconstruction using Consensus Equilibrium,'' {\em SIAM Journal on Imaging Sciences}, vol. 11, no. 3, pp. 2001-2020, Sept. 2018.

  16. pdf, K. Aditya Mohan, K. C. Prabhat, Charudatta Phatak, Marc De Graef, and Charles A. Bouman, ``Model-Based Iterative Reconstruction of Magnetization using Vector Field Electron Tomography,'' {\em IEEE Transactions on Computational Imaging}, vol. 4, no. 3, pp. 432-446, Sept. 2018.

  17. pdf, Shijie Zhang, Zhengtian Song, G. M. Dilshan Godaliyadda, Dong Hye Ye, Azhad Chowdhury, Atanu Sengupta, Gregery Buzzard, Charles A. Bouman, and Garth Simpson, ``Dynamic Sparse Sampling for Confocal Raman Microscopy,'' ``Analytical Chemistry,'' vol. 90, pp. 4461-4469, 2018.

  18. pdf, video presentation, Xiao Wang, Amit Sabne, Putt Sakdhnagool, Sherman J. Kisner, Charles A. Bouman, and Samuel P. Midkiff, ``Massively Parallel 3D Image Reconstruction,'' 2017 Supercomputing Conference (SC17), ACM, November 13-16, 2017. (Selected as one of three finalists for 2017 ACM Gordon Bell Prize.)

  19. pdf, Casey J. Pellizzari, Mark F. Spencer, and Charles A. Bouman, ``Demonstration of single-shot digital holography using a Bayesian framework,'' {\em The Journal of the Optical Society of America A (JOSA-A)}, vol. 35, no. 1, pp. 103-107, January 2018.

  20. pdf, arXiv, G. M. Dilshan P. Godaliyadda, Dong Hye Ye, Michael D. Uchic, Michael A. Groeber, Gregery T. Buzzard, and Charles A. Bouman, ``A Framework for Dynamic Image Sampling Based on Supervised Learning,'' {\em IEEE Transactions on Computational Imaging}, vol. 4, no. 1, March 2018.

  21. pdf, Yan Zhang, G. M. Dilshan Godaliyadda, Nicola Ferrier, Emine B. Gulsoy, Charles A. Bouman, and Charudatta Phatak, ``Reduced Electron Exposure for Energy-Dispersive Spectroscopy using Dynamic Sampling,'' {\em Ultramicroscopy}, vol. 184, pp. 90-97, 2018.

  22. pdf, Casey J. Pellizzari, Mark F. Spencer, and Charles A. Bouman, ``Phase-Error Estimation and Image Reconstruction from Digital-Holography Data using a Bayesian Framework, {\em The Journal of the Optical Society of America A (JOSA-A)}, vol. 34, no. 9, pp. 1659-1669, Sept. 2017.

  23. pdf, Casey J. Pellizzari, Russell Trahan, Hangying Zhou, Skip Williams, Stacie E. Williams, Bijan Nemati, Michael Shao, and Charles A. Bouman, ``Optically-Coherent Image Formation and Denoising Using Plug and Play Inversion Framework,'' {\em Applied Optics}, vol. 56, no. 16, pp. 4735-4744, June 2017.

  24. pdf, Zeeshan Nadir, Michael S. Brown, Mary L. Comer, and Charles A. Bouman, ``A Model-Based Iterative Reconstruction Approach to Tunable Diode Laser Absorption Tomography,'' to appear in {\em IEEE Transactions on Computational Imaging}.

  25. pdf, Amit Sabne, Xiao Wang, Sherman Kisner, Charles Bouman, Anand Raghunathan, and Samuel Midkiff, ``Model-based Iterative CT Image Reconstruction on GPUs, {\em 21st ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (PPoPP '167),} February 4-8, 2017.

  26. pdf, Casey J. Pellizzari, Russell Trahan, Hanying Zhou, Skip Williams, Stacie E. Williams, Bijan Nemati, Michael Shao, and Charles A. Bouman, ``Synthetic Aperature LADAR: A Model-Based Approach,'' {\em IEEE Transactions on Computational Imaging}, vol. 3, no. 4, pp. 901-916, Dec. 2017.

  27. pdf, arXiv, K. C. Prabhat , K. Aditya Mohan, Charudatta Phatak, Charles Bouman and Marc De Graef, ``3D Reconstruction of the Magnetic Vector Potential using Model Based Iterative Reconstruction,'' {\em Ultramicroscopy}. vol. 182, pp. 131-144, July 2017.

  28. pdf, Nicole M. Scarborough, G. M. Dilshan P. Godaliyadda, Dong Hye Ye, David J. Kissick, Zhang, Justin A. Newman, Michael J. Sheedlo, Azhad Chowdhury, Robert F. Fischetti, Chittaranjan Das, Gregery T. Buzzard, Charles A. Bouman, and Garth J. Simpson, ``Dynamic X-ray Diffraction Sampling for Protein Crystal Positioning,'' {\em Journal of Synchrotron Radiation}, vol. 24, pp. 188-195, 2017.

  29. pdf, Azhad U. Chowdhury, Dong Hye Ye, Zhengtian Song, Shijie Zhang, Hartmut G. Hedderich, Babita Mallick, Satyanarayana Thirunahari, Srividya Ramakrishnan , Atanu Sengupta, Ellen J. Gualtieri, Charles A. Bouman, and Garth J. Simpson, ``Second Harmonic Generation Guided Raman Spectroscopy for Sensitive Detection of Polymorph Transitions,'' {\em Analytical Chemistry,} vol. 89, no. 11, pp. 5958-5965, May 2017.

  30. pdf, SungHwan Hwang, Chang Wan Han, Singanallur Venkatakrishnan, Charles A Bouman, and Volkan Ortalan, ``Towards the Low-Dose Characterization of Beam Sensitive Nanostructures via Implementation of Sparse Image Acquisition in Scanning Transmission Electron Microscopy,'' {\em Measurement Science and Technology}, vol. 28, no. 4, February 2017.

  31. pdf, Zhiqian Chang, Ruoqiao Zhang, Jean-Baptiste Thibault, Debashish Pal, Lin Fu, Ken Sauer, and Charles Bouman, ``Modeling and Pre-Treatment of Photon-Starved CT Data for Iterative Reconstruction,'' {\em IEEE Trans. on Medical Imaging,} vol. 36, no. 1, Jan. 2017.

  32. pdf, Suhas Sreehari, S. Venkat Venkatakrishnan, Brendt Wohlberg, Gregery T. Buzzard, Lawrence F. Drummy, Jeffrey P. Simmons, and Charles A. Bouman, ``Plug-and-Play Priors for Bright Field Electron Tomography and Sparse Interpolation,'' {\em IEEE Transactions on Computational Imaging}, vol. 2, no, 4, pp. 408-423, December 2016.

  33. pdf, Junshi Liu, Swagath Venkataramani, S. Venkat Venkatakrishnan, Yun Pan, Charles A. Bouman, and Anand Ragunathan, ``EMBIRA: An Accelerator for Model-Based Iterative Reconstruction,'' {\em IEEE Trans. on Very Large Scale Integration (VLSI) Systems}, vol. 24, no. 11, pp. 3243-56, Nov. 2016.

  34. paper, arXiv, Ruoqiao Zhang, Dong Hye Ye, Debashish Pal, Jean-Baptiste Thibault, Ken D. Sauer, and Charles A. Bouman, ``A Gaussian Mixture MRF for Model-Based Iterative Reconstruction with Applications to Low-Dose X-ray CT,'' {\em IEEE Transactions on Computational Imaging}, vol. 2, no. 3, Sept. 2016.

  35. pdf, Xiao Wang, Amit Sabne, Sherman Kisner, Anand Raghunathan, Charles Bouman, and Samuel Midkiff, ``High Performance Model Based Image Reconstruction,'' {\em 21st ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (PPoPP '16),} March 12-16, 2016.

  36. pdf, S. V. Venkatakrishnan, L. F. Drummy, M. A. Jackson, C. A. Bouman, J. P. Simmons, and M. De Graef, ``A Phantom-Based Forward Projection Approach in Support of Model-Based Iterative Reconstructions for HAADF-STEM Tomography,'' {\em Ultramicroscopy} vol. 160, pp. 7-17, January 2016.

  37. pdf, Leonardo R. Bachega, Srikanth Hariharan, Charles A. Bouman, and Ness Shroff, ``Distributed Signal Decorrelation and Detection in Sensor Networks Using the Vector Sparse Matrix Transform,'' {\em IEEE Transactions on Image Processing}, vol. 24, no. 12, pp. 6011-24, Dec. 2015.

  38. pdf, web link J. W. Gibbs, K. Aditya Mohan, E. B. Gulsoy, A. J. Shahani, X. Xiao, C. A. Bouman, M. De Graef, and P. W. Voorhees, ``The Three-Dimensional Morphology of Growing Dendrites,'' {\em Scientific Reports}, no. 5, article number 22824, July 2015.

  39. pdf Pengchong Jin, Charles A. Bouman, and Ken D. Sauer, ``A Model-Based Image Reconstruction Algorithm with Simultaneous Beam Hardening Correction for X-Ray CT,'' {\em IEEE Transactions on Computational Imaging}, vol. 1, no. 3, pp. 200-216, September 2015.

  40. pdf K. Aditya Mohan, S. V. Venkatakrishnan, J. W. Gibbs, E. B. Gulsoy, X. Xiao, M. De Graef, P. W. Voorhees, and C. A. Bouman, ``TIMBIR: A Method for Time-Space Reconstruction from Interlaced Views,'' {\em IEEE Transactions on Computational Imaging}, vol. 1, no. 2, pp. 96 - 111, June 2015.

  41. pdf S. V. Venkatakrishnan, L. F. Drummy, M. Jackson, M. De Graef, J. Simmons, and C. A. Bouman, ``Model-Based Iterative Reconstruction for Bright Field Electron Tomography,'' {\em IEEE Transactions on Computational Imaging}. vol. 1, no. 1, pp. 1 - 15, March 2015.

  42. pdf S. Z. Sullivan, R. D. Muir, J. A. Newman, M. S. Carlsen, S. Sreehari, C. Doerge, N. J. Begue, R. M. Everly, C. A. Bouman, G. J. Simpson, ``High Frame-Rate Multichannel Bean-Scanning Microscopy Based on Lissajous Trajectories,'' {Optics Express}, vol. 22, no. 20, October 6, 2014.

  43. pdf Jianing Wei, Charles A. Bouman, and Jan P. Allebach, ``Fast Space-Varying Convolution Using Matrix Source Coding with Applications to Camera Stray Light Reduction,'' {\em IEEE Transactions on Image Processing}, vol. 23, no. 5, p 1965-1979, May 2014.

  44. pdf Mustafa E. Kamasak, Bradley T. Christian, Charles A. Bouman, and Evan D. Morris, ``Quality and Precision of Parametric Images Created from PET Sinogram Data by Direct Reconstruction: Proof of Concept,'' {\em IEEE Trans. on Medical Imaging}, pp. 695-707, vol. 33, no. 3, March 2014.

  45. pdf Ruoqiao Zhang, Jean-Baptiste Thibault, Charles A. Bouman, Ken D. Sauer, and Jiang Hsieh, ``Model-Based Iterative Reconstruction for Dual-Energy X-Ray CT using a Joint Quadratic Likelihood Model,'' {\em IEEE Trans. on Medical Imaging}. pp. 117-134, vol. 33, no. 1, January 2014.

  46. pdf S. Venkat V. Venkatakrishnan, Lawrence F. Drummy, Michael Jackson, Marc De Graef, Jeff Simmons, and Charles A. Bouman, ``A Model Based Iterative Reconstruction Algorithm For High Angle Annular Dark Field - Scanning Transmission Electron Microscope (HAADF-STEM) Tomography,'' {\em IEEE Transactions on Image Processing,} pp. 4532-4544, vol. 22, no. 1, November 2013.

  47. pdf Jiang Hsieh, Brian Nett, Zhou Yu, Ken Sauer Jean-Baptiste Thibault, and Charles A. Bouman, ``Recent Advances in CT Image Reconstruction,'' {\em Current Radiology Reports,} DOI 10.1007/s40134-012-0003-7, January 2013.

  48. pdf Tak-Shing Wong, Charles A. Bouman, and Ilya Pollak, ``Image Enhancement Using the Hypothesis Selection Filter: Theory and Application to JPEG Decoding,'' {\em IEEE Transactions on Image Processing,} pp. 898-913, vol. 22, no. 3, March 2013.

  49. pdf James Theiler, Gaungzhi Cao, Leonardo R. Bachega, Charles A. Bouman, ``Sparse Matrix Transform for Hyperspectral Image Processing,'' vol. 5, no. 3, {\em IEEE Selected Topics in Signal Process,} June 2011.

  50. pdf Eri Haneda and Charles A. Bouman, ``Text Segmentation for MRC Document Compression,'' vol. 20, no. 6, {\em IEEE Trans. on Image Processing,} June 2011.

  51. pdf Guangzhi Cao, Leonardo R. Bachega, and Charles A. Bouman, ``The Sparse Matrix Transform for Covariance Estimation and Analysis of High Dimensional Signals,'' pp. 625-640, vol. 20, no. 3, {\em IEEE Trans. on Image Processing,} March 2011.

  52. pdf Zhou Yu, Jean-Baptiste Thibault, Charles A. Bouman, Ken D. Sauer, and Jiang Hsieh, ``Fast Model-Based X-ray CT Reconstruction Using Spatially Non-Homogeneous ICD Optimization,'' {\em IEEE Trans. on Image Processing,} vol. 20, no. 1, pp. 161-175, January 2011.

  53. pdf Hasib Siddiqui, Mireille Boutin, and Charles A. Bouman, ``Hardware-Friendly Descreening,'' {\em IEEE Trans. on Image Processing,} pp. 746-757, vol. 19, no. 3, March 2010.

  54. pdf Tak-Shing Wong, Charles A. Bouman, Ilya Pollak, and Zhigang Fan, ``A Document Image Model and Estimation Algorithm for Optimized JPEG Decompression,'' {\em IEEE Transactions on Image Processing,} pp. 2518-2535, vol. 18, no. 11, November 2009.

  55. pdf Guangzhi Cao, Charles A. Bouman, and Kevin J. Webb, ``Non-Iterative MAP Reconstruction Using Sparse Matrix Representations'' {\em IEEE Transactions on Image Processing,} pp. 2085-2099, vol. 18, no. 9, September 2009.

  56. pdf Vaibhav Gaind, Kevin J. Webb, Sumith Kularatne, and Charles A. Bouman, ``Towards in Vivo Imaging of Intramolecular Fluorescence Resonance Energy Transfer Parameters,'' {\em Journal of the Optical Society of America A (JOSA-A)}, pp. 1805-1813, vol. 26, no. 8, August 2009.

  57. pdf Hasib Siddiqui and Charles A. Bouman, ``Hierarchical Color Correction for Camera Cell Phone Images,'' {\em IEEE Trans. on Image Processing,} pp. 2138-2155, vol. 17, no. 11, November 2008.

  58. pdf Xiaogang Dong, Kai-Lung Hua, Peter Majewicz, Gordon McNutt, Charles A. Bouman, Jan P. Allebach, and Ilya Pollak, ``Document Page Classification Algorithms in Low-End Copy Pipeline,'' {\em Journal of Electronic Imaging,} p 043011, vol. 17, no. 4, October 2008.

  59. pdf Santae Ahn, Abhijit J. Chaudhari, Felix Darvas, Charles A. Bouman, and Richard M. Leahy, ``Fast Iterative Image Reconstruction Methods for Fully 3D Multispectral Bioluminescence Tomography,'' {\em Physics in Medicine and Biology,} pp. 3921-3942, vol. 53, no. 14, July 2008.

  60. pdf C. C. Constantinescu, K. K. Yoder, D. A. Kareken, C. A. Bouman, S. J. O'Connor, M. D. Normandin, and E. D. Morris, `Estimation from PET data of transient changes in dopamine concentration induced by alcohol: support for a non-parametric signal estimation method,'' {\em Physics in Medicine and Biology,} pp. 1353-1367, vol. 53, February 2008.

  61. pdf Guanzhi Cao, Vaibhav Gaind, Charles A. Bouman, and Kevin J. Webb, ``Localization of an Absorbing Inhomogeneity in a Scattering Medium Based on an Optical Diffusion Model,'' {\em Optics Letters,} pp. 3026-3028, vol. 32, no. 20, October 2007.

  62. paper and associated errata Jean-Baptiste Thibault, Ken Sauer, Charles Bouman, and Jiang Hsieh, ``A Three-Dimensional Statistical Approach to Improved Image Quality for Multi-Slice Helical CT,'' {\em Medical Physics,} pp. 4526-4544, vol. 34, no. 11, November 2007.

  63. pdf C. C. Constantinescu, C. A. Bouman, and E. D. Morris, ``Nonparametric Extraction of Transient Changes in Neurotransmitter Concentration from Dynamic PET Data,'' {\em IEEE Trans. on Medical Imaging,} pp. 359-373, vol. 26, no. 3, March 2007.

  64. pdf J. M. Siskind, J. Sherman, Jr., I. Pollak, M. P. Harper, and C. A. Bouman, ``Spatial Random Tree Grammars for Modeling Hierarchal Structure in Images with Regions of Arbitrary Shape,'' {\em IEEE Trans. on Pattern Anal. and Mach. Intell.} pp. 1504-1519, vol. 29, no. 9, September 2007.

  65. pdf Hasib Siddiqui and Charles A. Bouman, ``Training-based Descreening,'' {\em IEEE Trans. on Image Processing,} pp. 789-802, vol. 16, no. 3, March 2007.

  66. pdf Guotong Feng and Charles A. Bouman, ``High Quality MRC Document Coding,'' {\em IEEE Trans. on Image Processing,} pp. 3152-3169, vol. 15, no. 10, October 2006.

  67. pdf Wiley Wang, Ilya Pollak, Tak-Shing Wong, Charles A. Bouman, Mary P. Harper, and Jeff Siskind, ``Hierarchical Stochastic Image Grammars for Classification and Segmentation,'' {\em IEEE Trans. on Image Processing,} pp. 3033-3052, vol. 15, no. 10, October 2006.

  68. pdf Seungseok Oh, Charles A. Bouman, and Kevin J. Webb, ``Multigrid Tomographic Inversion with Variable Resolution Data and Image Spaces,'' {\em IEEE Trans. on Image Processing,} pp. 2805-2819, vol. 15, no. 9, Sept. 2006.

  69. pdf Yan Huang, Ilya Pollak, Minh N. Do, and Charles A. Bouman, ``Fast Search for Best Representations in Multitree Dictionaries,'' {\em IEEE Trans. on Image Processing,} pp. 1779-1793, vol. 15, no. 7, July 2006.

  70. pdf Animesh Khemka, Charles A. Bouman, and Mark R. Bell, ``Inverse Problems in Atmospheric Dispersion with Randomly Scattered Sensors,'' {\em Digital Signal Processing,} pp. 638-651, vol. 16, 2006.

  71. pdf Yan Huang, Ilya Pollak, Charles A. Bouman, and Minh N. Do, ``Best Basis Search in Lapped Dictionaries,'' {\em IEEE Trans. on Signal Processing}, pp. 651-664, vol. 54, no. 2, Feb. 2006.

  72. pdf Adam B. Milstein, Kevin J. Webb, and Charles A. Bouman, ``Estimation of Kinetic Model Parameters in Fluorescence Optical Diffusion Tomography,'' {\em Journal of the Optical Society of America A (JOSA-A)}, pp. 1357-1368, vol. 22, no. 7, July 2005.

  73. pdf M. E. Kamasak, C. A. Bouman, E. D. Morris and K. Sauer, ``Direct Reconstruction of Kinetic Parameter Images from Dynamic PET Data,'' {\em IEEE Trans. on Medical Imaging,} pp. 636-650, vol. 24, no. 5, May 2005.

  74. pdf Adam B. Milstein, Michael D. Kennedy, Philip S. Low, Charles A. Bouman, and Kevin J. Webb, ``Detection and Localization of a Fluorescing Mouse Tumor in a Turbid Medium,'' {\em Applied Optics,} pp. 2300-2310, vol. 44, no. 12, April 2005.

  75. pdf Seungseok Oh, Adam B. Milstein, Charles A. Bouman, and Kevin J. Webb, ``A General Framework for Nonlinear Multigrid Inversion,'' {\em IEEE Trans. on Image Processing,} pp. 125-140, vol. 14, no. 1, Jan. 2005.

  76. pdf Adam B. Milstein, Jonathan J. Stott, Seungseok Oh, David A. Boas, R. P. Millane, Charles A. Bouman, and Kevin J. Webb, ``Fluorescence Optical Diffusion Tomography using Multiple-Frequency Data,'' {\em Journal of the Optical Society of America A (JOSA-A)}, pp. 1035-1049, vol. 21, no. 6, June 2004.

  77. pdf Zhen He and Charles A. Bouman, ``AM/FM Halftoning: Digital Halftoning Through Simultaneous Modulation of Dot Size and Dot Density,'' {\em Journal of Electronic Imaging}, pp. 286-302, vol. 13, no. 2, April 2004.

  78. pdf Sea Chen, Charles A. Bouman, and Mark J. Lowe, ``Clustered Components Analysis for Functional MRI,'' {\em IEEE Transactions on Medical Imaging}, pp. 85-98, vol. 23, no. 1, Jan. 2004.

  79. pdf Cuneyt Taskiran, Jau-Yuen Chen, Alberto Albiol, Luis Torres, Charles A. Bouman, and Edward J. Delp, ``ViBE: A Compressed Video Database Structured for Active Browsing and Search,'' {\em IEEE Transactions on Multimedia}, pp. 103-118, vol. 6, no. 1, Feb. 2004.

  80. pdf A. Alessio, K. Sauer, and C. A. Bouman, ``MAP Reconstruction from Spatially Correlated PET Data,'' {\em IEEE Trans. on Nuclear Science,} pp. 1445-1451, vol. 50, no. 5, Oct. 2003.

  81. pdf Adam B. Milstein, Seungseok Oh, Kevin J. Webb, and Charles A. Bouman, Quan Zhang, David A. Boas, and R. P. Millane, ``Fluorescence Optical Diffusion Tomography,'' {\em Applied Optics}, pp. 3081-3094, vol. 42, no. 16, June 2003.

  82. pdf Thomas Frese, Ned C. Rouze, Charles A. Bouman, Ken Sauer, and Gary D. Hutchins, ``Quantitative Comparison of FBP, EM, and Bayesian Reconstruction Algorithms, Including the Impact of Accurate System Modeling, for the IndyPET Scanner,'' {\em IEEE Transactions on Medical Imaging}, pp. 258-276, vol. 22, no. 2, Feb. 2003.

  83. formated Seungseok Oh, Adam B. Milstein, Rick P. Millane, Charles A. Bouman, and Kevin J. Webb, ``Source-detector Calibration in Three-Dimensional Bayesian Optical Diffusion Tomography,'' {\em Journal of the Optical Society of America A (JOSA-A)}, vol. 19, no. 10, pp. 1983-1993, Oct. 2002.

  84. pdf T. Frese, C. A. Bouman, and K. Sauer, ``Adaptive Wavelet Graph Model for Bayesian Tomographic Reconstructions,'' {\em IEEE Trans. on Image Processing,} pp. 756-770, vol. 11, July 2002.

  85. pdf Blanca I. And\'{\i}a, Ken D. Sauer and Charles A. Bouman, ``Nonlinear Backprojection for Tomographic Reconstruction,'' {\em IEEE Trans. on Nuclear Science}, vol. 49, no. 1, pp. 61-68, Feb. 2002.

  86. pdf A. B. Milstein, S. Oh, J. S. Reynolds, K. J. Webb, C. A. Bouman, and R. P. Millane, ``Three-dimensional Bayesian Optical Diffusion Imaging with Experimental Data,'' {\em Optics Letters,} pp. 95-97, vol. 27, no. 2, Jan. 2002.

  87. pdf J. C. Ye, C. A. Bouman, K. J. Webb, and R. P. Millane, ``Nonlinear Multigrid Algorithms for Bayesian Optical Diffusion Tomography,'' {\em IEEE Trans. on Image Processing,} pp. 909-922, vol. 10, no. 6, June 2001.

  88. pdf H. Cheng and C. Bouman, ``Document Compression Using Rate-Distortion Optimized Segmentation,'' {\em Journal of Electronic Imaging,} pp. 460-474, vol. 10, no. 2, April 2001.

  89. pdf H. Cheng and C. A. Bouman, ``Multiscale Bayesian Segmentation Using a Trainable Context Model,'' {\em IEEE Trans. on Image Processing,} pp. 511-525, vol. 10, no. 4, April 2001.

  90. pdf Jun Zheng, Suhail Saquib, Ken Sauer, and Charles A. Bouman, ``Parallelizable Bayesian Tomography Algorithms with Rapid, Guaranteed Convergence,'' {\em IEEE Trans. on Image Processing,} pp. 1745-1759, vol. 9, no 10, Oct. 2000.

  91. pdf Jean-Baptiste Thibault, Ken Sauer, and Charles A. Bouman, ``Newton-Style Optimization for Emission Tomographic Estimation,'' {\em Journal of Electronic Imaging,} pp. 269-282, vol. 9, no. 3, July 2000.

  92. pdf C. Brian Atkins, Jan P. Allebach, and Charles A. Bouman, ``Halftone Postprocessing for Improved Rendition of Highlights and Shadows,'' {\em Journal of Electronic Imaging,} pp. 151-158, vol. 9, no. 2, April 2000.

  93. pdf Jau-Yuen Chen, Charles A. Bouman, and John C. Dalton, ``Hierarchical Browsing and Search of Large Image Databases,'' {\em IEEE Trans. on Image Processing,} vol. 9, no. 3, pp. 442-455, March 2000.

  94. pdf Jong. Chul Ye, Kevin J. Webb, Charles A. Bouman, and Rick P. Millane, ``Optical Diffusion Tomography Using Iterative Coordinate Descent Optimization in a Bayesian Framework,'' {\em Journal of the Optical Society of America A (JOSA-A)}, vol. 16, no. 10, pp. 2400-2412, Oct. 1999.

  95. pdf Suhail S. Saquib, Charles A. Bouman, and Ken Sauer, ``ML Parameter Estimation for Markov Random Fields, with Applications to Bayesian Tomography,'' {\em IEEE Trans. on Image Processing,} vol. 7, no. 7, pp. 1029-1044, July 1998.

  96. pdf Jisang Yoo, Edward J. Coyle, and Charles A. Bouman, ``Dual Stack Filters and the Modified Difference of Estimates Approach to Edge Detection,'' {\em IEEE Trans. on Image Processing,} vol. 6, no. 12, pp. 1634-1645, Dec. 1997.

  97. pdf James Z. Chang, J. P. Allebach, and C. A. Bouman, ``Sequential Linear Interpolation of Multidimensional Functions,'' {\em IEEE Trans. on Image Processing,} vol. 6, no. 9, pp. 1231-1245, Sept. 1997.

  98. pdf Khalid W. Khawaja, Anthony A. Maciejewski, Daniel Tretter, and Charles A. Bouman, ``A Multiscale Assembly Inspection Algorithm,'' {\em IEEE Robotics and Automation Magazine}, vol. 3, no. 2, pp. 15-22, June 1996.

  99. pdf Michael D. Zoltowski, Jan P. Allebach, and Charles A. Bouman, `` `Digital Signal Processing With Applications:' A New and Successful Approach to Undergraduate DSP Education,'' {\em IEEE Trans. on Education,} vol 39, no. 2, pp. 120-126, May 1996.

  100. pdf Charles A. Bouman and Ken Sauer, ``A Unified Approach to Statistical Tomography Using Coordinate Descent Optimization,'' {\em IEEE Trans. on Image Processing,} vol. 5, no. 3, pp. 480-492, March 1996.

  101. pdf Mark Wolski, Charles A. Bouman, Jan P. Allebach, and Eric Walowit, ``Optimization of Sensor Response Functions for Colorimetry of Reflective and Emissive Objects,'' {\em IEEE Trans. on Image Processing,} vol. 5, no. 3, pp. 507-517, March 1996.

  102. pdf Dan Tretter, Charles A. Bouman, Khalid Khawaja and Anthony Maciejewski, ``A Multiscale Stochastic Image Model for Automated Inspection,'' {\em IEEE Trans. on Image Processing}, vol. 4, no. 12, pp. 1641-1654, December 1995.

  103. pdf, Bernd Kolpatzik and Charles A. Bouman, ``Optimal Universal Color Palette Design for Error Diffusion,'' {\em Journal of Electronic Imaging}, vol. 4, no. 2, pp. 131-143, April 1995.

  104. pdf; scanned pdf Raja Balasubramanian, Charles A. Bouman, and Jan P. Allebach, ``Sequential Scalar Quantization of Vectors: An Analysis,'' {\em IEEE Trans. on Image Processing,} vol. 4, no. 3, pp. 1282-1295, September 1995.

  105. pdf Dan Tretter and Charles A. Bouman, ``Optimal Transforms for Multispectral and Multilayer Image Coding,'' {\em IEEE Trans. on Image Processing,} vol. 4, no. 9, pp. 296-308, March 1995.

  106. Raja Balasubramanian, Jan P. Allebach, and Charles A. Bouman, ``Color Image Quantization Using a Fast Binary Splitting Technique,'' {\em Journal of the Optical Society of America A (JOSA-A),} vol. 11, pp. 2777-2786, November 1994.

  107. pdf Charles A. Bouman and Michael Shapiro, ``A Multiscale Random Field Model for Bayesian Image Segmentation,'' {\em IEEE Trans. on Image Processing,} vol. 3, no. 2, pp. 162-177, March 1994.

  108. pdf Raja Balasubramanian, Charles A. Bouman, and Jan P. Allebach, ``Sequential Scalar Quantization of Color Images,'' {\em Journal of Electronic Imaging}, pp. 45-59, vol. 3, no. 1, Jan. 1994.

  109. pdf Charles Bouman and Ken Sauer, ``A Generalized Gaussian Image Model for Edge-Preserving MAP Estimation,'' {\em IEEE Trans. on Image Processing}, vol. 2, no. 3, pp. 296-310, July 1993.

  110. Jisang Yoo, Charles A. Bouman, Edward J. Delp, and Edward J. Coyle, ``The Nonlinear Prefiltering and Difference of Estimates Approaches to Edge Detection: Applications of Stack Filters,'' {\em Computer Vision Graphics and Image Processing,} vol. 55, no. 2, pp. 140-159, March 1993.

  111. pdf; Ken Sauer and Charles A. Bouman, ``A Local Update Strategy for Iterative Reconstruction from Projections,'' {\em IEEE Trans. on Sig. Proc.}, vol. 41, no. 2, pp. 534-548, Feb. 1993.

  112. pdf Ken Sauer, and Charles A. Bouman, ``Bayesian Estimation of Transmission Tomograms Using Segmentation Based Optimization,'' {\em IEEE Trans. on Nuclear Science}, vol. 39, no. 4, pp. 1144-1152, Aug. 1992.

  113. pdf, Bernd Kolpatzik and Charles A. Bouman, ``Optimized Error Diffusion for Image Display,'' {\em Journal of Electronic Imaging}, vol. 1, no. 3, pp. 277-292, July 1992.

  114. pdf Michael Orchard and Charles A. Bouman, ``Color Quantization of Images,'' {\em IEEE Trans. on Sig. Proc.}, vol. 39, no. 12, pp. 2677-2690, Dec. 1991.

  115. pdf Charles Bouman and Bede Liu, ``Multiple Resolution Segmentation of Textured Images,'' {\em IEEE Trans. on Pattern Anal. and Mach. Intell.}, vol. 13, no. 2, pp. 99-113, Feb. 1991.

  116. pdf Jeffery H. Fischer, John H. Cafarella, Charles A. Bouman, Gerard T. Flynn, Victor S. Dolat, and Rene Boisvert, ``Wideband and Packet Radio for Multipath Environments,'' {\it IEEE Trans. on Comm.}, vol. 36, no. 5, pp. 564-576, May 1988.

  117. pdf Jeffrey H. Fischer, John H. Cafarella, Duane R. Arsenault, Gerard T. Flynn, and Charles A. Bouman, ``Wideband Packet Radio Technology,'' {\bf (invited paper)}, {\it Proc. of IEEE}, vol. 75, no. 1, pp. 100-115, Jan. 1987.