Selected Publications in Tomography:

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Multislice Helical Scan CT

Publications at the Fully 3D Meeting and Conference on Image Formation in X-Ray Computed Tomography:
  1. pdf Ruoqiao Zhang, Jean-Baptiste Thibault, Charles A. Bouman, Ken D. Sauer, and Jiang Hsieh, ``Model-Based Iterative Reconstruction for Dual-Energy X-Ray CT using a Joint Quadratic Likelihood Model,'' {\em IEEE Trans. on Medical Imaging}. pp. 117-134, vol. 33, no. 1, January 2014.

  2. pdf Jiang Hsieh, Brian Nett, Zhou Yu, Ken Sauer Jean-Baptiste Thibault, and Charles A. Bouman, ``Recent Advances in CT Image Reconstruction,'' {\em Current Radiology Reports,} DOI 10.1007/s40134-012-0003-7, January 2013.

  3. pdf Zhou Yu, Jean-Baptiste Thibault, Charles A. Bouman, Ken D. Sauer, and Jiang Hsieh, ``Fast Model-Based X-ray CT Reconstruction Using Spatially Non-Homogeneous ICD Optimization,'' {\em IEEE Trans. on Image Processing,} vol. 20, no. 1, pp. 161-175, January 2011.

  4. paper and associated errata Jean-Baptiste Thibault, Ken Sauer, Charles Bouman, and Jiang Hsieh, ``A Three-Dimensional Statistical Approach to Improved Image Quality for Multi-Slice Helical CT,'' {\em Medical Physics,} pp. 4526-4544, vol. 34, no. 11, November 2007.

  5. pdf Zhou Yu, Jean-Baptiste Thibault, Charles A. Bouman, Ken D. Sauer, and Jiang Hsieh, ``Non-homogeneous ICD Optimization for Targeted Reconstruction of Volumetric CT,'' {\em Proceedings of SPIE-IS\&T Electronic Imaging - Computational Imaging VI,} vol. v 6814, January 28-29 2008.

  6. pdf Zhou Yu, Jean-Baptiste Thibault, Charles A. Bouman, Ken D. Sauer, and Jiang Hsieh, ``Non-homogeneous Updates for the Iterative Coordinate Descent Algorithm,'' {\em Proceedings of SPIE-IS\&T Electronic Imaging - Computational Imaging V,} vol. v 6498, January 29-31 2007.

  7. pdf Zhou Yu, Jean-Baptiste Thibault, Ken Sauer, Charles Bouman, and Jiang Hsieh, ``Accelerated Line Search for Coordinate Descent Optimization,'' {\em IEEE Nuclear Science Symposium,} pp. 2841-2844, vol. 5, Oct. 29 - Nov. 1, 2006.

  8. pdf J.-B. Thibault, C. A. Bouman, K. D. Sauer, J. Hsieh, ``A Recursive Filter for Noise Reduction in Statistical Iterative Tomographic Imaging,'' SPIE/IS\&T Conference on {\em Computational Imaging IV,} vol. 6065, San Jose CA, Jan. 16-17, 2006.

  9. pdf Jean-Baptiste Thibault, Ken Sauer, Charles Bouman, and Jiang Hsieh, ``Three-dimensional Statistical Modeling for Image Quality Improvements in Multi-Slice Helical CT,'' {\em International Conference on Fully 3D Reconstruction in Radiology and Nuclear Medicine,} Salt Lake City, Utah, USA July 6-9, 2005.

  10. pdf Jean-Baptiste Thibault, Ken Sauer, Charles Bouman, and Jiang Hsieh, ``High Quality Iterative Image Reconstruction for Multi-Slice Helical CT,'' {\em International Conference on Fully 3D Reconstruction in Radiology and Nuclear Medicine,} Saint Malo, June 29 - July 4, 2003.

  11. pdf B. De Man, S. Basu, J.-B. Thibault, J. Hsieh, J. A. Fessler, C. A. Bouman, K. Sauer, ``A Study of Different Minimization Approaches for Iterative Reconstruction in X-Ray CT,'' {\em IEEE Nuclear Science Symposium,} vol. 5, pp. 2708-2710, October 23-29, 2005.

Tomographic Reconstruction in Material Science

  1. pdf S. Venkat V. Venkatakrishnan, Lawrence F. Drummy, Michael Jackson, Marc De Graef, Jeff Simmons, and Charles A. Bouman, ``A Model Based Iterative Reconstruction Algorithm For High Angle Annular Dark Field - Scanning Transmission Electron Microscope (HAADF-STEM) Tomography,'' {\em IEEE Transactions on Image Processing,} pp. 4532-4544, vol. 22, no. 1, November 2013.

Non-Iterative MAP Reconstruction

  1. pdf Guangzhi Cao and Charles A. Bouman, ``Non-Iterative MAP Reconstruction Using Sparse Matrix Representations'' to appear in the {\em IEEE Transactions on Image Processing}.

  2. pdf Guangzhi Cao, Charles A. Bouman, Kevin J. Webb, ``Fast Reconstruction Algorithms for Optical Tomography using Sparse Matrix Representation'' {\bf (invited paper)}, {\em International Symposium on Biomedical Imaging,} April 14, 2007.

  3. pdf G. Cao, C. A. Bouman, and K. J. Webb, ``Fast and Efficient Stored Matrix Techniques for Optical Tomography,'' {\bf (invited paper)}, {\em Fortieth Asilomar Conference on Signals, Systems and Computers,} pp. 156-160, Pacific Grove CA, Oct. 29 - Nov. 1, 2006.

Kinetic Tomography

  1. pdf Mustafa E. Kamasak, Bradley T. Christian, Charles A. Bouman, and Evan D. Morris, ``Quality and Precision of Parametric Images Created from PET Sinogram Data by Direct Reconstruction: Proof of Concept,'' {\em IEEE Trans. on Medical Imaging}, pp. 695-707, vol. 33, no. 3, March 2014.

  2. pdf C. C. Constantinescu, C. A. Bouman, and E. D. Morris, ``Nonparametric Extraction of Transient Changes in Neurotransmitter Concentration from Dynamic PET Data,'' {\em IEEE Trans. on Medical Imaging,} pp 359-373, vol. 26, no. 3, March 2007.

  3. pdf M. E. Kamasak, C. A. Bouman, E. D. Morris and K. Sauer, ``Direct Reconstruction of Kinetic Parameter Images from Dynamic PET Data,'' {\em IEEE Trans. on Medical Imaging,} pp. 636-650, vol. 24, no. 5, May 2005.

  4. pdf E. D. Morris, M. E. Kamasak, B. T. Cristian, T. E. Cheng, and C. A. Bouman, ``Visualizing All the Fits: Evaluating the Quality and Precision of Parametric Images Created from Direct Reconstruction of PET Sinogram Data'' {\em IEEE International Symposium on Biomedical Imaging,} pp. 291-294, April 6 2006.

Journal Publications on Conventional Tomography

  1. pdf Seungseok Oh, Charles A. Bouman, and Kevin J. Webb, ``Multigrid Tomographic Inversion with Variable Resolution Data and Image Spaces,'' {\em IEEE Trans. on Image Processing,} pp. 2805-2819, vol. 15, no. 9, Sept. 2006.

  2. pdf Thomas Frese, Ned C. Rouze, Charles A. Bouman, Ken Sauer, and Gary D. Hutchins, ``Quantitative Comparison of FBP, EM, and Bayesian Reconstruction Algorithms, Including the Impact of Accurate System Modeling, for the IndyPET Scanner,'' {\em IEEE Transactions on Medical Imaging}, pp. 258-276, vol. 22, no. 2, February 2003.

  3. pdf T. Frese, C. A. Bouman, and K. Sauer, ``Adaptive Wavelet Graph Model for Bayesian Tomographic Reconstructions,'' {\em IEEE Trans. on Image Processing,} pp. 756-770, vol. 11, July 2002.

  4. postscript pdf Blanca I. Andia, Ken D. Sauer and Charles A. Bouman, ``Nonlinear Backprojection for Tomographic Reconstruction'' {\em IEEE Trans. on Nuclear Science}, vol. 49, no. 1, pp. 61-68, February 2002.

  5. pdf Jun Zheng, Suhail S. Saquib, Ken Sauer and Charles A. Bouman, ``Parallelizable Bayesian Tomography Algorithms with Rapid, Guaranteed Convergence,'' {\em IEEE Trans. on Image Processing,} pp. 1745-1759, vol. 9, no. 10, October 2000.

  6. pdf J.-B. Thibault, K. Sauer, and C. Bouman, ``Newton-Style Optimization for Emission Tomographic Estimation,'' {\em Journal of Electronic Imaging,} pp. 269-282, vol. 9, no. 3, July 2000.

  7. manuscript final publication S. S. Saquib, C. A. Bouman, and K. Sauer, ``ML Parameter Estimation for Markov Random Fields, with Applications to Bayesian Tomography,'' {\em IEEE Trans. on Image Processing.} vol. 7, no. 7, pp. 1029-1044, July 1998.

  8. manuscript final publication C. A. Bouman and K. Sauer, ``A Unified Approach to Statistical Tomography using Coordinate Descent Optimization,'' {\em IEEE Trans. on Image Processing,} vol. 5, no. 3, pp. 480-492, March 1996.

  9. manuscript final publication C. Bouman and K. Sauer, ``A Generalized Gaussian Image Model for Edge-Preserving MAP Estimation,'' {\em IEEE Trans. on Image Processing}, vol. 2, no. 3, pp. 296-310, July 1993.

  10. manuscript final publication K. Sauer and C. Bouman, ``A Local Update Strategy for Iterative Reconstruction from Projections,'' {\em IEEE Trans. on Sig. Proc.}, vol. 41, no. 2, pp. 534-548, Feb. 1993.

  11. manuscript final publication K. Sauer, and C. Bouman, ``Bayesian Estimation of Transmission Tomograms Using Segmentation Based Optimization,'' {\em IEEE Trans. on Nuclear Science}, vol. 39, no. 4, pp. 1144-1152, Aug. 1992.

Journal Publications on Optical Diffusion Tomography

  1. pdf Vaibhav Gaind, Kevin J. Webb, Sumith Kularatne, and Charles A. Bouman, ``Towards in Vivo Imaging of Intramolecular Fluorescence Resonance Energy Transfer Parameters,'' {\em Journal of the Optical Society of America A (Optics, Image Science and Vision),} pp. 1805-1813, vol. 26, no. 8, August 2009.

  2. pdf Santae Ahn, Abhijit J. Chaudhari, Felix Darvas, Charles A. Bouman, and Richard M. Leahy, ``Fast Iterative Image Reconstruction Methods for Fully 3D Multispectral Bioluminescence Tomography,'' to appear in the {\em Physics in Medicine and Biology}.

  3. pdf Guanzhi Cao, Vaibhav Gaind, Charles A. Bouman, and Kevin J. Webb, ``Localization of an Absorbing Inhomogeneity in a Scattering Medium Based on an Optical Diffusion Model,'' to appear in {\em Optics Letters}.

  4. pdf Adam B. Milstein, Kevin J. Webb, and Charles A. Bouman, ``Estimation of Kinetic Model Parameters in Fluorescence Optical Diffusion Tomography,'' {\em Journal of the Optical Society of America A,} pp. 1357-1368, vol. 22, no. 7, July 2005.

  5. pdf Adam B. Milstein, Michael D. Kennedy, Philip S. Low, Charles A. Bouman, and Kevin J. Webb, ``Detection and Localization of a Fluorescing Mouse Tumor in a Turbid Medium,'' {\em Applied Optics,} pp. 2300-2310, vol. 44, no. 12, April 20, 2005.

  6. pdf Seungseok Oh, Adam B. Milstein, Charles A. Bouman, and Kevin J. Webb, ``A General Framework for Nonlinear Multigrid Inversion,'' {\em IEEE Trans. on Image Processing,} pp. 125-140, vol. 14, no. 1, January 2005.

  7. pdf Adam B. Milstein, Jonathan J. Stott, Seungseok Oh, David A. Boas, R. P. Millane, Charles A. Bouman, and Kevin J. Webb, ``Fluorescence Optical Diffusion Tomography using Multiple-Frequency Data,'' {\em Journal of the Optical Society of America A}, pp. 1035-1049, vol. 21, no. 6, June 2004.

  8. pdf Adam B. Milstein, Seungseok Oh, Kevin J. Webb, Charles A. Bouman, Quan Zhang, David A. Boas, and R. P. Millane, ``Fluorescence Optical Diffusion Tomography,'' {\em Applied Optics}, pp 3081-3094, vol. 42, no. 16, June 2003.

  9. postscript, pdf, formated Seungseok Oh, Adam B. Milstein, Rick P. Millane, Charles A. Bouman, and Kevin J. Webb, ``Source-detector calibration in three-dimensional Bayesian optical diffusion tomography,'' {\em Journal of the Optical Society of America A}, vol. 19, no. 10, pp. 1983-1993, October, 2002.

  10. pdf A. B. Milstein, S. Oh, J. S. Reynolds, K. J. Webb, C. A. Bouman, and R. P. Millane, ``Three-dimensional Bayesian Optical Diffusion Imaging with Experimental Data,'' {\em Optics Letters,} pp. 95-97, vol. 27, no. 2, January 2002.

  11. postscript pdf J. C. Ye, C. A. Bouman, K. J. Webb, and R. P. Millane, ``Nonlinear Multigrid Algorithms for Bayesian Optical Diffusion Tomography,'' {\em IEEE Trans. on Image Processing,} pp. 909-922, vol. 10, no. 6, June 2001.

  12. pdf J. C. Ye, K. J. Webb, C. A. Bouman, and R. P. Millane, ``Optical Diffusion Tomography Using Interative Coordinate Descent Optimization in a Bayesian Framework,'' {\em Journal of the Optical Society of America A.} vol. 16, no. 10. pp. 2400-2412, Oct. 1999.

Book Chapters:

    postscript pdf T. Frese, C. A. Bouman, and K. Sauer, ``Multiscale Bayesian Methods for Discrete Tomography,'' {\em Discrete Tomography: Foundations, Algorithms and Applications,} edited by Gabor T. Herman and Attila Kuba, pp. 237-261, Birkhauser Boston, Cambridge, MA, 1999.

Theses:

  1. Thesis , Ph.D. Defense Presentation: Adam B. Milstein, ``Imaging of Near-Infrared Fluorescence, Absorption, and Scattering in Turbid Media,'' Ph.D. thesis, School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN 47907, August 2004.

  2. postscript pdf Thomas Frese, ``Multiresolution Image Modeing and Bayesian Reconstruction Algorithms with Application to Emission Tomography,'' Ph.D. thesis, School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN 47907, May 2001.

  3. postscript pdf Suhail S. Saquib, ``Edge-Preserving Models and Efficient Algorithms for Ill-Posed Inverse Problems in Image Processing,'' Ph.D. thesis, School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN 47907, May 1997.

Selected Conference Publications

  1. paper G. M. Dilshan Godaliyadda, Gregory T. Buzzard, and Charles A. Bouman, ``A Model-Based Framework for Fast Dynamic Image Sampling,'' to appear in the proceedings of {\em IEEE International Conference on Accoustics Speech and Signal Processing,} Florence, Italy, May 4-9, 2014.

  2. paper K. Aditya Mohan, S. V. Venkatakrishnan, Lawrence F. Drummy, Jeff Simmons, Dilworth Y. Parkinson, and Charles A. Bouman, `Model-Based Iterative Reconstruction for Synchrotron X-Ray Tomography,'' to appear in the proceedings of {\em IEEE International Conference on Accoustics Speech and Signal Processing,} Florence, Italy, May 4-9, 2014.

  3. paper Pengchong Jin, Charles A. Bouman, and Ken D. Sauer, ``A Method for Simultaneous Image Reconstruction and Beam Hardening Correction,'' {\em IEEE Medical Imaging Conference,} Seoul Korea, Oct. 27- Nov. 2, 2013.

  4. paper slides Ruoqiao Zhang, Charles A. Bouman, Jean-Baptiste Thibault, and Ken D. Sauer, ``Gaussian Mixture Markov Random Field For Image Denoising and Reconstruction,'' {\em IEEE 2013 IEEE Global Conference on Signal and Information Processing (GlobalSIP),} Austin, Texas, USA, December 3-5, 2013.
    pdf Technical report with associated proof of ``surrogate functions for exponential mixtures'' Lemma.

  5. pdf Singanallur V. Venkatakrishanan, Charles A. Bouman, and Brendt Wohlberg, ``Plug-and-Play Priors for Model Based Reconstruction,'' {\em IEEE 2013 IEEE Global Conference on Signal and Information Processing (GlobalSIP),} Austin, Texas, USA, December 3-5, 2013.

  6. pdf Sherman J. Kisner, Pengchnog Jin, Charles A. Bouman, Ken Sauer, Walter Garms, Todd Gable, Seungseok Oh, Matthew Merzbacher, and Sondre Skatter, ``Innovative Data Weighting for Iterative Reconstruction in Helical CT Security Baggage Scanner,'' {\em 47th IEEE International Carnahan Conference on Security Technology,} Medellin-Colombia, October 8-11, 2013

  7. pdf S. V. Venkatakrishnan, L. F. Drummy, M. De Graef, J. P. Simmons, C. A. Bouman, ``Model based iterative reconstruction for Bright Field electron tomography,'' Proc. SPIE 8657, Computational Imaging XI, 86570A (February 14, 2013); doi:10.1117/12.2013228.

  8. pdf R. Zhang, J.-B. Thibault, C. A. Bouman, Ken D. Sauer, and J. Hsieh, ``A Model-Based Iterative Algorithm for Dual-Energy X-Ray CT Reconstruction,'' to appear in the proceedings of the {\em Second International Conference on Image Formation in X-Ray Computed Tomography,} Salt Lake City, Utah, June 24-27, 2012.

  9. pdf P. Jin, E. Haneda, K. Sauer, and C. A. Bouman, ``A Model-Based 3D Multislice Helical CT Reconstruction Algorithm for Transportation Security Application,'' to appear in the proceedings of the {\em Second International Conference on Image Formation in X-Ray Computed Tomography,} Salt Lake City, Utah, June 24-27, 2012.

  10. pdf S. Venkatakrishnan, L. Drummy, M. Jackson, M. De Graef, J. Simmons, and C. Bouman, ``Bayesian Tomographic Reconstruction for High Angle Annular Dark Field (HAADF) Scnanning Transmission Electron Microscopy (STEM),'' {\em Proceedings of IEEE Statistical Signal Processing Workshop,} August 5-8, 2012.

  11. pdf, viewgraphs S. J. Kisner, E. Haneda, C. A. Bouman, S. Skatter, M. Kourinny, and S. Bedford, ``Limited View Angle CT Reconstruction,'' {\em Proceedings of SPIE-IS\&T Electronic Imaging -Computational Imaging X,} vol. 8296, January 23-24, 2012.

  12. pdf, poster Tecnical Report E. Haneda and C. A. Bouman, ``Implicit Priors for Model-Based Inversion,'' {\em IEEE Int'l Conf. on Accoustics Speech and Signal Processing,}, Kyoto Japan, March 30, 2012.

  13. pdf, Zhou Yu, Jean-Baptiste Thibault, Charles Bouman, Ken Sauer, and Jiang Hsieh, ``Edge-Localized Iterative Reconstruction for Computed Tomography,'' {\em Fully 3D Reconstruction Meeting,} 2009.

  14. postscript, pdf, presentation S. Oh, A. B. Milstein, C. A. Bouman, K. J. Webb, ``Multigrid Inversion Algorithms with Applications to Optical Diffusion Tomography,'' {\em Proceedings of the 36th Asilomar Conference on Signals, Systems, and Computers,} Pacific Grove, CA, Nov. 3-6, 2002.

  15. pdf Charles Bouman and Ken Sauer, ``Nonlinear Multigrid Methods of Optimization in Bayesian Tomographic Image Reconstruction,'' {\em Proc. of SPIE Conf. on Neural and Stochastic Methods in Image and Signal Processing}, vol. 1766, pp. 296-306, San Diego, California, July 19-24, 1992.

  16. postscript pdf viewgraphs in pdf Jong C. Ye, Charles A. Bouman, Rick P. Millane and Kevin J. Webb, ``Nonlinear Multigrid Optimization for Bayesian Diffusion Tomography,'' {\em IEEE Int'l Conf. on Image Proc.}, Kobe Japan, October 25-28, 1999.

  17. postscript pdf Thomas Frese, Charles A. Bouman, and Ken Sauer, ``Discrete Multiscale Bayesian Image Reconstruction,'' {\em 33rd Asilomar Conference on Signals, Systems, and Computers}, pp. 1687-1691, Pacific Grove, CA, November 1-4, 1998.

  18. postscript pdf S. Saquib, J. Zheng, C. A. Bouman, and K. Sauer, ``Provably Convergent Coordinate Descent in Statistical Tomographic Reconstruction,'' {\em IEEE Int'l Conf. on Image Proc.}, vol. 2, pp. 741-744, Lausanne Switzerland, Sept.\ 16-19, 1996.

  19. postscript pdf S. S. Saquib, C. A. Bouman, and K. Sauer, ``A Non-Homogeneous MRF Model for Multiresolution Bayesian Estimation,'' {\em IEEE Int'l Conf. on Image Proc.}, vol. 2, pp. 445-448, Lausanne Switzerland, Sept.\ 16-19, 1996.

  20. postscript pdf Suhail S. Saquib, Charles A. Bouman, and Ken Sauer, S. Saquib, C. A. Bouman, and K. Sauer, ``Efficient ML Estimation of the Shape Parameter for Generalized Gaussians MRF,' ' vol. 4, pp. 2229-2232, {\em Proc. of IEEE Int'l Conf. on Acoust., Speech and Sig. Proc.}, Atlanta, GA, May 7-10, 1996.

  21. postscript pdf Ken D. Sauer, Sean Borman, and Charles A. Bouman, ``Parallel Computation of Sequential Pixel Updates in Statistical Tomographic Reconstruction'' {\em Proc. of International Conference on Image Processing}, vol 2, pp. 93-96, Washington DC, October 22-25, 1995.