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Tong Group

Publications

A full list of publications and citation statistics for Dr. Yunjie Tong is provided on Google Scholar.

Some selective journals, conferences and invited presentations are listed below.

Journals

  • Yang, H.-C. (Shawn), Inglis, B., Talavage, T. M., Nair, V. V., Yao, J. (Fiona), Fitzgerald, B., Schwichtenberg, A. J., & Tong, Y. (2022). Coupling between cerebrovascular oscillations and CSF flow fluctuations during wakefulness: An fMRI study. Journal of Cerebral Blood Flow & Metabolism. https://doi.org/10.1177/0271678X221074639 [PDF]
  • Nair, V. V., Kish, B. R., Yang, H. C. S., Yu, Z., Guo, H., Tong, Y., & Liang, Z. (2021). Monitoring Anesthesia using Simultaneous Functional Near Infrared Spectroscopy and Electroencephalography. Clinical Neurophysiology. https://doi.org/10.1016/j.clinph.2021.03.025 [PDF]
  • Kish, B., Herr, S., Yang, H. S., Suan, S., Shi, R., Tong, Y. (2021). Whole body measurements using Near-Infrared Spectroscopy in a rat spinal cord contusion injury model. The Journal of Spinal Cord Medicine, 10.1080/10790268.2021.1911504. [PDF] 
  • Liang, Z., Tian, H., Yang, H. C., Arimitsu, T., Takahashi, T., Sassaroli, A., Fantini, S., Niu, H., Minagawa, Y., & Tong, Y. (2021). Tracking Brain Development from Neonates to the Elderly by Hemoglobin Phase Measurement using Functional Near-infrared Spectroscopy. IEEE journal of biomedical and health informatics, PP, 10.1109/JBHI.2021.3053900. Advance online publication. https://doi.org/10.1109/JBHI.2021.3053900 [PDF]
  • Yücel, M. A., Lühmann, A. V., Scholkmann, F., Gervain, J., Dan, I., Ayaz, H., Boas, D., Cooper, R. J., Culver, J., Elwell, C. E., Eggebrecht, A., Franceschini, M. A., Grova, C., Homae, F., Lesage, F., Obrig, H., Tachtsidis, I., Tak, S., Tong, Y., Torricelli, A., … Wolf, M. (2021). Best practices for fNIRS publications. Neurophotonics, 8(1), 012101. https://doi.org/10.1117/1.NPh.8.1.012101 [PDF]
  • Yao, J. F., Yang, H. S., Wang, J. H., Liang, Z., Talavage, T. M., Tamer, G. G., Jr, Jang, I., & Tong, Y. (2021). A novel method of quantifying hemodynamic delays to improve hemodynamic response, and CVR estimates in CO2 challenge fMRI. Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism, 271678X20978582. Advance online publication. https://doi.org/10.1177/0271678X20978582 [PDF]
  • Yang HS, Liang Z, Vike NL, Taylor L, Rispoli JV, Nauman EA, Talavage TM, Tong Y* (2020) Characterizing near infrared spectroscopy signal under hypercapnia. J. Biophotonics. 2020; 13: e202000173. https://doi.org/10.1002/jbio.202000173 [PDF]
  • Li Y, Ma Y, Ma S, Liang Z, Xu F, Tong Y, Frederick BD, Yin S, Li X. (2020) Asymmetry of peripheral vascular biomarkers in ischemic stroke patients, assessed using NIRS. J Biomed Opt. Jun;25(6):1-16. doi: 10.1117/1. JBO.25.6.065001. PMID: 32562389; PMCID: PMC7306490. [PDF]
  • Li, Y.*, Ma, Y., Ma, S, Hocke LM, Tong Y, Frederick BD (2020) A low-cost multichannel NIRS oximeter for monitoring systemic low-frequency oscillations. Neural Comput & Applic 32, 15629จC15641 (2020). https://doi.org/10.1007/s00521-020-04897-5 [PDF]
  • Tong Y, Hocke LM and Frederick BD*. (2019) Low frequency systemic hemodynamic "noise" in resting state BOLD fMRI: Characteristics, Causes, Implications, Mitigation Strategies, and Applications. Front. Neurosci., 13:787 doi: 10.3389/fnins.2019.00787 [PDF]
  • Yao JF, Wang, JH, Yang HS, Liang Z, Cohen-Gadol AA, Rayz VL and Tong Y*. (2019) Cerebral circulation time derived from fMRI signals in large blood vessels. J Magn Reson Imaging, 50: 1504-1513. https://doi.org/10.1002/jmri.26765 
  • Sutoko S, Chan YL, Obata A, Sato H, Maki A, Numata T, Funane T, Atsumori H, Kiguchi M, Tang T, Li Y, Frederick BD, Tong Y*. (2019). Denoising of neuronal signal from mixed systemic low frequency oscillation using peripheral measurement as noise regressor in near-infrared imaging. Neurophotonics., 6(1), 015001. (in press) [PDF]
  • Tong Y*, Yao JF, Chen JJ, Frederick BD (2018) The resting-state fMRI arterial signal predicts differential blood transit time through the brain. J Cereb Blood Flow Metab. 2018:271678X17753329. Epub 2018/01/16. doi: 10.1177/0271678X17753329. PubMed PMID: 29333912. [PDF]
  • Yang HS, Liang Z, Yao JF, Shen X, Frederick BD, Tong Y*. (2018). Vascular effects of caffeine found in BOLD fMRI. Journal of Neuroscience Research.2018;00:1–11.(in press) [PDF]
  • Li Y, Zhang H, Yu M, Yu W, Frederick BD, Tong Y* (2018). Systemic low-frequency oscillations observed in the periphery of healthy human subjects. J Biomed Opt. 23(5):1-11. Epub 2018/05/08. doi: 10.1117/1.JBO.23.5.057001. PubMed PMID: 29729091; PMCID: PMC5935293 [PDF]
  • Liang, Z., Minagawa, Y., Yang, H., Tian, H., Cheng, L., Arimitsu, T., . . . Tong, Y. (2018). Symbolic time series analysis of fNIRS signals in brain development assessment. Journal of Neural Engineering., 15(6), 066013. [PDF]
  • Tong Y*, Lindsey KP, Hocke LM, Vitaliano G, Mintzopoulos D and Frederick BD (2017) Perfusion information extracted from resting state fMRI. Journal of Cerebral Blood Flow Metabolism; 37(2): 564-576. [PDF]
  • Hocke LM*, Tong Y, Lindsey KP and Frederick BD (2016) Comparison of peripheral NIRS LFOs to other denoising methods in resting state functional fMRI with ultra-high temporal resolution. Magnetic Resonance Medicine, 76(6): 1697-1707 [PDF]
  • Frederick BD*, Strother M, Lindsey KP, Hocke LM, Tong Y and Donahue MJ (2016) Time delay processing of hypercapnic fMRI allows quantitative parameterization of cerebrovascular reactivity and bloodflow delays. Journal of Cerebral Blood Flow Metabolism; 36(10):1767-1779. PMID: 26661192 [PDF]
  • Tong Y* and Frederick BD (2014) Tracking cerebral blood flow in BOLD fMRI using recursively generated regressors. Human Brain Mapping, November; 35(11):5471-85. PMID: 24954380 [PDF]
  • Tong Y*, Hocke LM, Frederick BD. (2013) Short TR multiband EPI with simultaneous pulse recording allows dynamic imaging of the cardiac pulsation signal. Magnetic Resonance Medicine, November; 72(5):1268-76. PMID: 24272768 [PDF]
  • Tong Y*, Hocke LM, Nickerson LD, Licata SC, Lindsey KP, Frederick BD. (2013) Evaluating the effects of systemic low frequency oscillations measured in the periphery on the independent component analysis results of resting state networks. Neuroimage, August 1;76:202-15. PMID: 23523805 [PDF]
  • Tong Y*, Hocke LM, Licata SC, Frederick BD. (2012) Low frequency oscillations measured in the periphery with near infrared spectroscopy are strongly correlated with blood oxygen level-dependent functional magnetic resonance imaging signals. Journal of Biomedical Optics, October; 17(10):106004. PMID: 23224003 [PDF]
  • Tong Y*, Frederick BD. (2010) Time lag dependent multimodal processing of concurrent fMRI and near-infrared spectroscopy (NIRS) data suggests a global circulatory origin for low-frequency oscillation signals in human brain. Neuroimage, November 1;53(2):553-64. PMID: 20600975 [PDF]

 

Conference proceedings

 

  • Tong Y, Hocke LM, Fan X, Janes, AC and Frederick BD (2015) “Can apparent resting state connectivity arise from systemic fluctuations?” Organization of Human Brain Mapping meeting, Honolulu, HI. (2015)
  • Tong Y, Hocke LM, Caine CE, Frederick BD and Morales OG (2015) “Monitoring brain activation of repetitive transcranial magnetic stimulation by functional near infrared spectroscopy,” 1st International Brain Stimulation Conference, Singapore.
  • Erdogan SB, Tong Y, Hocke LM, Lindsey KP and Frederick BD (2015) “The performance of global mean regression can be improved by voxel-wise temporal alignment,” Organization of Human Brain Mapping meeting, Honolulu, HI.

 

Invited Presentations

 

  • Symposium Presentation: Neurovascular Coupling in Health and Disease: Revisiting the Hemodynamic Response Function, OHBM Annual International Meeting (Visual Meeting 2020).

  • Symposium Presentation: Perfusion imaging biomarkers for traumatic brain injuries, The 3rd IU/PU joint Symposium on Spinal Cord and Brain Injury Research, Indiana University School of Medicine (Goodman Hall Auditorium), USA (2019)

  • Symposium Presentation: Perfusion Biomarkers in White Matter, 6th Indiana Neuroimaging Symposium and Hackathon, Indiana University School of Medicine (Goodman Hall Auditorium), USA (2019)

  • Symposium Presentation: Denoising Functional MRI/NIRS data, 5th Indiana Neuroimaging Symposium and Hackathon, West Lafayette, USA  (2017)

  • Conference Presentation: Developing BOLD-signal-based perfusion map, 5th International Conference on Analytical Science and Technology (ICAST), Cheongju, South Korea (2017)

  • Conference Presentation: Concurrent near infrared spectroscopy (NIRS) and functional MRI studies on human brain function and physiology, The Annual Meeting of Japanese Optical Functional Brain Imaging Society, Tokyo, Japan (2016)
  • Invited presentation: Concurrent near infrared spectroscopy (NIRS) and functional MRI studies on human brain function and physiology, Advanced Telecommunications Research Institute International (ATR), Kyoto, Japan (2016)
  • Conference Presentation: Perfusion map derived from resting state fMRI, International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting, Singapore, Singapore (2016)
  • Invited presentation: Applications of Time Delay Processing and its Impacts on Resting State fMRI, Beijing Normal University, Beijing, China (2016)
  • Invited presentation: Concurrent near infrared spectroscopy (NIRS) and functional MRI studies on human brain function and physiology, Center for Information and Neural Networks (Cinet), Osaka University, Osaka, Japan (2016)