Software Tools

In addition to developing custom software as needed for individual projects using python, MATLAB, or R, members of SNAPlab use and contribute to (and/or maintain) the following open-source software tools for the analysis of neurophysiological data. Click on the names or widgets to go to the official website for each tool.

ANLffr

The package provides code for multitaper-analysis of spectra and phase locking along with complex-principal component analysis of phase-locking for multichannel FFRs. Support for "bootstrapping" any of the included functions is also available. Please visit the project homepage to download the software. Some of the manuscripts associated with the tools can be found on the publications page.

MNE

A software package for processing magnetoencephalography (MEG) and electroencephalography (EEG) data. The package provides compiled C code for Linux and OS X platforms and a growing set of platform independent tools in python. Please visit the project homepage to download the software.

scikit-learn

A python based library for machine learning applications.

freesurfer

An open source software suite for processing and analyzing (human) brain MRI images.

lme4

An R package for fitting linear and generalized linear mixed-effects models for statistical analysis and inference. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' "glue".