New Undergrad Course, ABE 301

New ABE numerical methods class

Engineering Faculty Document No. 23-04

March 1, 2005

 

 

TO:         Engineering Faculty

FROM:   The Faculty of Agricultural and Biological Engineering

RE:          New Undergraduate Level Course

 

The faculty of the Department of Agricultural and Biological Engineering has approved the following new undergraduate level course.  This action is now submitted to the Engineering Faculty with a recommendation for approval.

 

ABE 301 - Modeling and Computational Tools in Biological Engineering

 

Sem. 2, Class 3, cr. 3

 

Prerequisites:   MA 265 and MA 266 or MA 262 and ABE 202

 

Description:
Introduction to principles of analysis, setup, and modeling of biological systems using fundamental principles of engineering.  Development of algebraic and differential models of steady state and transient processes involving material and energy balances, elementary thermodynamic, transport, and kinetic reaction principles, and economics in biological engineering systems. 

 

Reasons:

While undergraduate engineering students take a wide range of mathematics courses and learn to apply these to previously developed models, they have relatively little direct education on how to develop quantitative models. The purpose of this course is to provide students with knowledge and skills needed to develop quantitative models from physical/industrial phenomena and the use of appropriate numerical methods for obtaining solutions to such models, as needed.

 

 

 

 

 

 

Bernard A. Engel

Professor and Acting Head

Agricultural and Biological Engineering Department

 

 

 

 

 

ABE 301 - Modeling and Computational Tools in Biological Engineering

 

Sem. 2, Class 3, cr. 3

 

Prerequisites:  MA 265 and MA 266 or MA 262 and ABE 202

 

Description:
Introduction to principles of analysis, setup, and modeling of biological systems using fundamental principles of engineering.  Development of algebraic and differential models of steady state and transient processes involving material and energy balances, elementary thermodynamic, transport, and kinetic reaction principles, and economics in biological engineering systems. 

 

Suggested reference and/or textbooks:

Applied Numerical Methods with Matlab for Engineers and Scientists by Steven C. 

   Chapra  (2005)  McGraw Hill.

 

Course Learning Objectives:

 

In this course the student will learn numerical modeling skills for interpolation, cubic splines, finding roots, statistical regression modeling, and numerical solution of differential equations.  Emphasis is placed on the use of computational tools for modeling and solution of problems.   Engineering problem solving skills will be developed via MathCad/Matlab software programming.

 

At the end of the course the student will be able to:

 

1.      understand principles of mathematics and computation used to develop numerical models of food and biological phenomena,

2.      understand the modeling limitations related to computational accuracy/error and statistical precision,

3.      gain an understanding of principles and techniques of data modeling, numerical approximation, maxima/minima determination, solutions of linear algebraic systems, IV/BDV ODE/PDE systems, and non-linear dynamic systems,

4.      develop skills to create numerical models from natural/biological systems using fundamental physical and chemical phenomena, such as reaction kinetics, transport phenomena, and thermodynamics, and

5.      develop skills for creating computational tools to quantify numerical models.

 


Topics

 

Week 1-2  What are models and why are they useful?

Empirical vs. Theoretical

Algebraic vs. Calculus/Differential

Linear vs. Nonlinear

Simulation vs. Optimization

Numerical Modeling

Computational, graphical

Numerical Accuracy/Precision/Error

Principles for developing models from physical phenomena

Numerical Computational Tools (MathCad/MatLab)

 

 

Week 3-4  Introduction to Concepts of Biological Engineering

Thermodynamics

Material balances/Energy balances

Chemical Potential/Vapor-Liquid Equilibrium

Reaction Kinetics

            Batch, Mixed Flow, Plug Flow reactors

Separations

            Chromatography

            Vapor-Liquid Equilibria

Economics

 

Week 5-6  Data Modeling

Water Vapor Pressure Modeling

Approximation methods using tabular data

                        Interpolation

                        Differentiation

Integration

            Steam tables

Empirical modeling of data

Statistical regression

                        Linear, polynomial

Antoine’s equation, production economics, pharmaceutical quality control

Non-statistical

Cubic splines

            Chromatographic separations,

Computational Tools Development

 

Week 7 Optimization

Gibbs Energy Minimization/Equilibrium

Finding Roots

            Newton method

            Bisection/false position

            Derivative slope methods

Computational Tools Development

 

Week 8 Linear systems

Biomass Separation Processes

Distillation/Vapor-Liquid Equilibria; Binary mixture separations

Substitution, Gaussian elimination, matrix algebra

            Linear Programming/Optimization

Computational Tools Development

 

Week 9-10 Unsteady State Biological Processes

Enzyme/Biochemical Reactions

Fermentation Kinetics

Conductive/Convective Heat Transfer in Cooking Foods

Ordinary Differential Equations

            Initial value/boundary conditions

            Euler

            Runge-Kutta

Computational Tools Development

 

Week 11-12 Unsteady State Biological Processes

Diffusion of Moisture in Biological Materials

Finite Element

            Difference equations

            Multidimensional elements

Computational Tools Development

 

Week 13-15 Dynamic Biological Processes

Microbial Population Dynamics, Metabolic Cycles, Imaging

Introduction to Non-Linear Dynamic systems

            Fractal graphics

            Prey-Predator models

            Attractors

            Bifurcation/Stability

Computational Tools Development

 

Prerequisite knowledge:

Calculus/differential equations

Mass/energy balances

Basic descriptive statistics

Concurrent with transport phenomena

 


Grading Policy                        %
Homework                   40
Quizzes                        10
Exams                          30
Semester project          20

 

Notes:

Examples from biological and food process systems

Teach basic concepts in unsteady state transport phenomena, reaction kinetics