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Group Seminar

Presenter Presentation Title Date
Prateek GuptaAn integrative model for incorporating cellular metabolism and signaling molecules3/15/2024
Sana Khanum Modeling enzyme competition in Eicosanoid metabolism in macrophage cells using a cybernetic framework03/01/2024
Prateek GuptaCybernetic modeling of eukaryotes02/02/2024
Sana KhanumModeling inflammatory response in mouse macrophages: Cybernetic model & information­-theoretic approaches01/19/2024
Pelin BulutogluStochastic nucleation of polymorphs06/04/2021
Dr. Rubesh RajaCybernetic model for transcriptional regulation during the mammalian cell cycle 05/28/2021
Dr. Shiyan WangLiterature review on antimicrobial transfer05/14/2021
Sana KhanumResearch update05/10/2021
Pelin BulutogluNucleation of NaCl from solution – Dynamics and Thermodynamics04/30/2021
Dr. Rubesh Raja Cybernetic modeling of eicosanoid metabolism in BMDM cells incorporating M1/M2 transitions 04/16/2021
Dr. Shiyan WangResearch update04/09/2021
Sana KhanumResearch update04/02/2021
Akancha Pandey Modeling of hydroxyurea based treatment of sickle cell disease 03/22/2021
Pelin BulutogluAPS Practice talk03/12/2021
Pelin Bulutoglu A summary of available methods to calculate nucleation rates 02/19/2021
Akancha PandeyModeling of hydroxyurea based treatment of sickle cell disease02/05/2021
Dr. Rubesh RajaCybernetic modeling of eicosanoid metabolism in BMDM cells incorporating M1/M2 transitions01/29/2021
Sana KhanumResearch update01/22/2021
Sana KhanumResearch update12/18/2020
Pelin BulutogluResearch update12/11/2020
Akancha PandeyResearch update12/04/2020
Dr. Shiyan WangResearch update11/20/2020
Dr. Rubesh RajaResearch update11/09/2020
Sana KhanumMutual information between cytokine secretion and eicosanoid metabolism during inflammation10/23/2020
Pelin BulutogluAn atomic level perspective on the mechanism of NaCl nucleation from highly concentrated solutions10/16/2020
Lina AboulmounaThesis defense practice10/09/2020
Akancha PandeyModeling of hydroxyurea based treatment of sickle cell disease10/02/2020
Lina Aboulmouna Cybernetic multi-objective modeling of the Eicosanoid pathway in macrophages09/18/2020
Sana KhanumResearch update08/28/2020
Dr. Rubesh RajaCybernetic modeling of eicosanoid metabolism in BMDM cells incorporating M1/M2 transitions08/07/2020
Dr. Shiyan WangExact sampling of polymer conformations using Brownian bridges07/31/2020
Pelin BulutogluNucleation of NaCl in concentrated solutions: Mechanism and rate07/10/2020
Kunaal JoshiCell size homeostasis07/03/2020
Sana KhanumMultiobjective function and mutual information theory06/26/2020
Akancha PandeyResearch update06/19/2020
Dr. Rubesh RajaMacrophages and recovery from acute and chronic inflammation06/05/2020
Pelin S BulutogluClassical nucleation theory approach to two-step nucleation of crystals05/29/2020
Akancha PandeyNeed for personalized model-based approach for hydroxyurea treatment of sickle cell disease05/22/2020
Sana KhanumCOX Inhibitors: Non-Steroidal Anti-Inflammatory Drugs (NSAIDs)05/15/2020
Lina Aboulmouna A preview of Covid19, Cytokine Storm, and Cybernetic modeling of the inflammatory response 05/08/2020
Naseeha Mohammed, Rubesh Raja Research updates 05/01/2020
Pelin S Bulutoglu Unraveling the mechanism of glycine nucleation from solution using molecular simulations – A step towards polymorph selection 04/17/2020
Akancha Pandey Research update 04/10/2020
Sana Khanum Inflammation and the immune system 04/03/2020
Prof. Ramkrishna Towards modeling of differentiation of stem cells to neurons on a patch 03/27/2020
Lina Aboulmouna Two roads diverged in a wood… 03/13/2020
Parul Verma Defense practice talk 02/28/2020
Rubesh Raja Research update 02/21/2020
Pelin S Bulutoglu Prelim practice talk 02/14/2020
Akancha Pandey Research update 02/07/2020
Parul Verma A mathematical investigation of chemotherapy-induced peripheral neuropathy 01/24/2020
Pelin S Bulutoglu Unraveling the mechanism of glycine nucleation from solution using molecular simulations – A step towards polymorph selection 01/17/2020
Anthony Thomas Vukovich, Rubesh Raja Research updates 12/05/2019
Lina Aboulmouna, Parul Verma AIChE practice talks 11/07/2019
Parul Verma, Akancha Pandey AIChE practice talks 10/31/2019
Pelin S Bulutoglu A multidimensional free energy approach for polymorph selection in crystallization of glycine from solution 10/24/2019
Kunaal Joshi The evolution of cells’ decision to divide 10/18/2019
Akancha Pandey Research update and future directions 10/11/2019
Lina Aboulmouna Research update and future directions 10/04/2019
Rubesh Raja HCV treatment dilemma: Connections with cancer 09/13/2019
Pelin S Bulutoglu Research update 08/22/2019
Akancha Pandey Modeling hydroxyurea dynamics to improve Sickle Cell Disease treatment 08/16/2019
Lina Aboulmouna A Cybernetic Approach to Modeling Lipid Metabolism in Mammalian Cells 08/02/2019
Parul Verma On exploring pain. Does dynamical theory have a role in understanding it 07/26/2019
Pelin S Bulutoglu Unraveling the mechanism of nucleation from solution using molecular simulations – A step towards polymorph prediction 07/19/2019
Rubesh Raja Optimizing HCV Treatments 07/11/2019
Parul Verma Using dynamical systems theory to investigate electrophysiology of a nociceptive neuron 06/07/2019
Akancha Pandey Research update 05/31/2019
Rubesh Raja A mathematical model of HIV treatment using broadly neutralizing antibodies 05/24/2019
Rubesh Raja Modelling and optimization of novel therapies for hepatitis C virus (HCV) and HIV infections 05/10/2019
Pelin S Bulutoglu Hybrid MD/MC for polymorph selection & estimation of aggregation frequency in an agitated filter dryer 04/26/2019
Lina Aboulmouna A cybernetic approach to modeling lipid metabolism in mammalian systems 04/19/2019
Kunaal Joshi Cell Size Homeostasis in C. Crescentus 04/05/2019
Akancha Pandey Mathematical Modeling Approach to Rescue Sickle Cell Disease Patients 02/28/2019
Dr. Sri Iyer-Biswas Emergent rules governing stochastic individual cell dynamics 02/08/2019
Parul Verma A mathematical investigation of chemotherapy induced peripheral neuropathy 02/01/2019
Pelin S Bulutoglu String method for polymorph selection in crystallization of glycine from solution 01/25/2019
Lina Aboulmouna Information Theoretic Approach to Complex Biological Network Reconstruction: Application to cytokine release in RAW 264.7 macrophages 01/18/2019
Akancha Pandey Pharmacokinetic – Pharmacodynamic Modeling of Hydroxyurea 12/07/2018
Parul Verma Integrative Mathematical Model to Investigate Chemotherapy Induced Peripheral Neuropathy through a Mechanistic Study of Neuronal Dynamics 10/26/2018
Parul Verma Pharmacometabonomics Approach for Early Prediction of Chemotherapy Induced Peripheral Neuropathy 10/19/2018
Parul Verma Dynamical systems analysis of peripheral neuropathy 10/12/2018
Pelin S Bulutoglu Qualifier Practice Talk 09/26/2018
Parul Verma Dynamical systems analysis of a simple pain model 09/21/2018
Ming-Hsu Chen Modeling of Inulin Consumption by Microbial Communities 09/07/2018
Lina Aboulmouna Prelim Practice Talk 08/31/2018
Pelin S Bulutoglu Research Progress 08/24/2018
Lina Aboulmouna Current Research Efforts and Future Directions 08/03/2018
Ming-Hsu Chen Mechanistic modeling of inulin consumption by microbial communities 07/06/2018
Pelin S Bulutoglu Theoretical Quest to Crystal Polymorphs 06/29/2018
Akancha Pandey Research Progress 06/15/2018
Parul Verma Pharmacometabonomics Approach for Early Prediction of Chemotherapy Induced Peripheral Neuropathy 06/08/2018
Lina Aboulmouna A Cybernetic Approach to Model Lipid Metabolism in a Mammalian System 06/01/2018
Pelin S Bulutoglu Research Progress 05/25/2018
Akancha Pandey Research Progress 05/11/2018
Parul Verma Mathematical model to investigate chemotherapy induced peripheral neuropathy through mechanistic study of neuronal dynamics 04/27/2018
Alan Min Deconvoluting Epigenetic Effects 04/13/2018
Pelin S Bulutoglu Research progress 04/06/2018
Lina Aboulmouna A tale of two models: Modeling lipid metabolism in a mammalian system 03/30/2018
Lina Aboulmouna A tale of two models: Modeling lipid metabolism in a mammalian system 03/23/2018
Akancha Pandey Non-Compliance in Hydroxyurea Treatment 03/16/2018
Parul Verma A Mathematical Modeling Approach to Investigate Chemotherapy Induced Peripheral Neuropathy (CIPN) 02/23/2018
Vu Tran Thesis defense practice talk 02/19/2018
Pelin S Bulutoglu Theoretical Quest to Crystal Polymorphs 02/09/2018
Lina Aboulmouna A tale of two models: Modeling lipid metabolism in mammalian systems 02/02/2018
Akancha Pandey An App for Sickle Cell Disease 01/26/2018