Publications

Journal Papers

N. J. Gadgil, P. Salama, K. W. Dunn, and E. J. Delp, "Segmentation of biological images containing multitarget labeling using the jelly filling framework," Journal of Medical Imaging, vol. 5, no. 4, pp. 044006-1-12, November 2018. DOI: 10.1117/1.JMI.5.4.044006

K. W. Dunn, K. S. Lorenz, P. Salama, and E. J. Delp, "IMART software for correction of motion artifacts in images collected in intravital microscopy," IntraVital, vol. 3, no. 1, pp. e28210-1-10, 2014. DOI: 10.4161/intv.28210, PMID: 26090271, PMCID: PMC4469201

K. S. Lorenz, P. Salama, K. W. Dunn, and E. J. Delp, "Digital Correction of Motion Artifacts in Microscopy Image Sequences Collected from Living Animals Using Rigid and Non-Rigid Registration," Journal of Microscopy, vol. 245, no. 2, pp. 148-160, February 2012. DOI: 10.1111/j.1365-2818.2011.03557.x, PMID: 22092443, PMCID: PMC3856233

R. G. Presson Jr, M. B. Brown, A. J. Fisher, R. M. Sandoval, K. W. Dunn, K. S. Lorenz, E. J. Delp, P. Salama, B. A. Molitoris, and I. Petrache, "Two-Photon Imaging within the Murine Thorax without Respiratory and Cardiac Motion Artifact," The American Journal of Pathology, vol. 179, no. 1, pp. 75-82, July 2011. DOI: 10.1016/j.ajpath.2011.03.048, PMID: 21703395, PMCID: PMC3123791

Conference Proceedings and Presentations

D. J. Ho, C. Fu, P. Salama, K. W. Dunn, and E. J. Delp, "Nuclei Detection and Segmentation of Fluorescence Microscopy Images Using Three Dimensional Convolutional Neural Networks," Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI), April 2018, Washington, DC. DOI: 10.1109/ISBI.2018.8363606

C. Fu, S. Lee, D. J. Ho, S. Han, P. Salama, K. W. Dunn, and E. J. Delp, "Three Dimensional Fluorescence Microscopy Image Synthesis and Segmentation," arXiv preprint arXiv:1801.07198, April 2018. LINK: arXiv:1801.07198

S. Lee, C. Fu, P. Salama, K. W. Dunn, and E. J. Delp, "Tubule Segmentation of Fluorescence Microscopy Images Based on Convolutional Neural Networks with Inhomogeneity Correction," Proceedings of the IS&T International Symposium on Electronic Imaging, January 2018, Burlingame, CA. DOI: 10.2352/ISSN.2470-1173.2018.15.COIMG-199

D. J. Ho, C. Fu, P. Salama, K. W. Dunn, and E. J. Delp, "Nuclei Segmentation of Fluorescence Microscopy Images Using Three Dimensional Convolutional Neural Networks," Proceedings of the Computer Vision for Microscopy Image Analysis (CVMI) workshop at Computer Vision and Pattern Recognition (CVPR), July 2017, Honolulu, HI. DOI: 10.1109/CVPRW.2017.116

C. Fu, D. J. Ho, S. Han, P. Salama, K. W. Dunn, and E. J. Delp, "Nuclei Segmentation of Fluorescence Microscopy Images Using Convolutional Neural Networks," Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI), April 2017, Melbourne, Australia. DOI: 10.1109/ISBI.2017.7950617

S. Lee, P. Salama, K. W. Dunn, and E. J. Delp, "Segmentation of Fluorescence Microscopy Images Using Three Dimensional Active Contours with Inhomogeneity Correction," Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI), April 2017, Melbourne, Australia. DOI: 10.1109/ISBI.2017.7950618

D. J. Ho, P. Salama, K. W. Dunn, and E. J. Delp, "Boundary Segmentation for Fluorescence Microscopy Using Steerable Filters," Proceedings of the SPIE Conference on Medical Imaging, February 2017, Orlando, FL. DOI: 10.1117/12.2254627

C. Fu, N. Gadgil, K. Tahboub, P. Salama, K. Dunn, and E. J. Delp, "Four Dimensional Image Registration for Intravital Microscopy," Proceedings of the Computer Vision for Microscopy Image Analysis (CVMI) workshop at Computer Vision and Pattern Recognition (CVPR), July 2016, Las Vegas, NV. DOI: 10.1109/CVPRW.2016.175

N. Gadgil, P. Salama, K. W. Dunn, and E. J. Delp, "Jelly Filling Segmentation of Fluorescence Microscopy Images Containing Incomplete Labeling," Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI), April 2016, Prague, Czech Republic. DOI: 10.1109/ISBI.2016.7493324

N. Gadgil, P. Salama, K. W. Dunn, and E. J. Delp, "Nuclei Segmentation of Fluorescence Microscopy Images Based on Midpoint Analysis and Marked Point Process," Proceedings of the IEEE Southwest Symposium on Image Analysis and Interpretation (SSIAI), March 2016, Santa Fe, NM. DOI: 10.1109/SSIAI.2016.7459169

S. Lee, P. Salama, K. W. Dunn, and E. J. Delp, "Boundary Fitting Based Segmentation of Fluorescence Micropscopy Images," Proceedings of the SPIE/IS&T International Symposium on Electronic Imaging, February 2015, San Francisco, CA. DOI: 10.1117/12.2085417

K. S. Lorenz, P. Salama, K. W. Dunn, and E. J. Delp, "Three Dimensional Segmentation Of Fluorescence Microscopy Images Using Active Surfaces," Proceedings of the IEEE International Conference on Image Processing (ICIP), September 2013, Melbourne, Australia. DOI: 10.1109/ICIP.2013.6738238

K. S. Lorenz, P. Salama, K. W. Dunn, and E. J. Delp, "A Multi-Resolution Approach to Non-Rigid Registration of Microscopy Images," Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI), May 2012, Barcelona, Spain. DOI: 10.1109/10.1109/ISBI.2012.6235518

K. S. Lorenz, P. Salama, K. W. Dunn, and E. J. Delp, "Non-Rigid Registration of Multiphoton Microscopy Images Using B-Splines," Proceedings of the SPIE Conference on Medical Imaging, February 2011, Lake Buena Vista (Orlando), FL. DOI: 10.1117/12.878304

K. S. Lorenz, F. Serrano, P. Salama, and E. J. Delp, "Segmentation And Registration Based Analysis Of Microscopy Images," Proceedings of the IEEE International Conference on Image Processing (ICIP), November 2009, Cairo, Egypt. DOI: 10.1109/ICIP.2009.5413531

K. S. Lorenz, F. Serrano, P. Salama, and E. J. Delp, "Analysis of Multiphoton Renal and Liver Microscopy Images: Preliminary Approaches to Segmentation and Registration," Proceedings of the 4th Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB), September 2009, National Library of Medicine (NIH), Bethesda, MD.

Thesis

N. Gadgil, “Error Resilient Video Coding Using Bitstream Syntax And Iterative Microscopy Image Segmentation,” Ph.D. thesis at Purdue University, August 2016.

K. S. Lorenz, “Registration and Segmentation Based Analysis of Microscopy Images,” Ph.D. thesis at Purdue University, May 2012.