DLStudioCodeOnly.py

# -*- coding: utf-8 -*- __version__ = '2.4.8' __author__ = "Avinash Kak (kak@purdue.edu)" __date__ = '2024-April-27' __url__ = 'https://engineering.purdue.edu/kak/distDLS/DLStudio-2.4.8.html' __copyright__ = "(C) 2024 Avinash Kak. Python Software Foundation." import sys,os,os.path import torch import torch.nn as nn import torch.nn.functional as F import torchvision import torchvision.transforms as tvt import torch.optim as optim import numpy as np from PIL import ImageFilter import numbers import re import math import random import copy import matplotlib.pyplot as plt import gzip import pickle import pymsgbox import time import logging #______________________________ DLStudio Class Definition ________________________________ class DLStudio(object): def __init__(self, *args, **kwargs ): if args: raise ValueError( '''DLStudio constructor can only be called with keyword arguments for the following keywords: epochs, learning_rate, batch_size, momentum, convo_layers_config, image_size, dataroot, path_saved_model, classes, image_size, convo_layers_config, fc_layers_config, debug_train, use_gpu, and debug_test''') learning_rate = epochs = batch_size = convo_layers_config = momentum = None image_size = fc_layers_config = dataroot = path_saved_model = classes = use_gpu = None debug_train = debug_test = None if 'dataroot' in kwargs : dataroot = kwargs.pop('dataroot') if 'learning_rate' in kwargs : learning_rate = kwargs.pop('learning_rate') if 'momentum' in kwargs : momentum = kwargs.pop('momentum') if 'epochs' in kwargs : epochs = kwargs.pop('epochs') if 'batch_size' in kwargs : batch_size = kwargs.pop('batch_size') if 'convo_layers_config' in kwargs : convo_layers_config = kwargs.pop('convo_layers_config') if 'image_size' in kwargs : image_size = kwargs.pop('image_size') if 'fc_layers_config' in kwargs : fc_layers_config = kwargs.pop('fc_layers_config') if 'path_saved_model' in kwargs : path_saved_model = kwargs.pop('path_saved_model') if 'classes' in kwargs : classes = kwargs.pop('classes') if 'use_gpu' in kwargs : use_gpu = kwargs.pop('use_gpu') if 'debug_train' in kwargs : debug_train = kwargs.pop('debug_train') if 'debug_test' in kwargs : debug_test = kwargs.pop('debug_test') if len(kwargs) != 0: raise ValueError('''You have provided unrecognizable keyword args''') if dataroot: self.dataroot = dataroot if convo_layers_config: self.convo_layers_config = convo_layers_config if image_size: self.image_size = image_size if fc_layers_config: self.fc_layers_config = fc_layers_config if fc_layers_config[0] != -1: raise Exception("""\n\n\nYour 'fc_layers_config' construction option is not correct. """ """The first element of the list of nodes in the fc layer must be -1 """ """because the input to fc will be set automatically to the size of """ """the final activation volume of the convolutional part of the network""") if path_saved_model: self.path_saved_model = path_saved_model if classes: self.class_labels = classes if learning_rate: self.learning_rate = learning_rate else: self.learning_rate = 1e-6 if momentum: self.momentum = momentum if epochs: self.epochs = epochs if batch_size: self.batch_size = batch_size if use_gpu is not None: self.use_gpu = use_gpu if use_gpu is True: if torch.cuda.is_available(): self.device = torch.device("cuda:0") else: self.device = torch.device("cpu") else: self.device = torch.device("cpu") if debug_train: self.debug_train = debug_train else: self.debug_train = 0 if debug_test: self.debug_test = debug_test else: self.debug_test = 0 self.debug_config = 0 def parse_config_string_for_convo_layers(self): ''' Each collection of 'n' otherwise identical layers in a convolutional network is specified by a string that looks like: "nx[a,b,c,d]-MaxPool(k)" where n = num of this type of convo layer a = number of out_channels [in_channels determined by prev layer] b,c = kernel for this layer is of size (b,c) [b along height, c along width] d = stride for convolutions k = maxpooling over kxk patches with stride of k Example: "n1x[a1,b1,c1,d1]-MaxPool(k1) n2x[a2,b2,c2,d2]-MaxPool(k2)" ''' configuration = self.convo_layers_config configs = configuration.split() all_convo_layers = [] image_size_after_layer = self.image_size for k,config in enumerate(configs): two_parts = config.split('-') how_many_conv_layers_with_this_config = int(two_parts[0][:config.index('x')]) if self.debug_config: print("\n\nhow many convo layers with this config: %d" % how_many_conv_layers_with_this_config) maxpooling_size = int(re.findall(r'\d+', two_parts[1])[0]) if self.debug_config: print("\nmax pooling size for all convo layers with this config: %d" % maxpooling_size) for conv_layer in range(how_many_conv_layers_with_this_config): convo_layer = {'out_channels':None, 'kernel_size':None, 'convo_stride':None, 'maxpool_size':None, 'maxpool_stride': None} kernel_params = two_parts[0][config.index('x')+1:][1:-1].split(',') if self.debug_config: print("\nkernel_params: %s" % str(kernel_params)) convo_layer['out_channels'] = int(kernel_params[0]) convo_layer['kernel_size'] = (int(kernel_params[1]), int(kernel_params[2])) convo_layer['convo_stride'] = int(kernel_params[3]) image_size_after_layer = [x // convo_layer['convo_stride'] for x in image_size_after_layer] convo_layer['maxpool_size'] = maxpooling_size convo_layer['maxpool_stride'] = maxpooling_size image_size_after_layer = [x // convo_layer['maxpool_size'] for x in image_size_after_layer] all_convo_layers.append(convo_layer) configs_for_all_convo_layers = {i : all_convo_layers[i] for i in range(len(all_convo_layers))} if self.debug_config: print("\n\nAll convo layers: %s" % str(configs_for_all_convo_layers)) last_convo_layer = configs_for_all_convo_layers[len(all_convo_layers)-1] out_nodes_final_layer = image_size_after_layer[0] * image_size_after_layer[1] * \ last_convo_layer['out_channels'] self.fc_layers_config[0] = out_nodes_final_layer self.configs_for_all_convo_layers = configs_for_all_convo_layers return configs_for_all_convo_layers def build_convo_layers(self, configs_for_all_convo_layers): conv_layers = nn.ModuleList() in_channels_for_next_layer = None for layer_index in configs_for_all_convo_layers: if self.debug_config: print("\n\n\nLayer index: %d" % layer_index) in_channels = 3 if layer_index == 0 else in_channels_for_next_layer out_channels = configs_for_all_convo_layers[layer_index]['out_channels'] kernel_size = configs_for_all_convo_layers[layer_index]['kernel_size'] padding = tuple((k-1) // 2 for k in kernel_size) stride = configs_for_all_convo_layers[layer_index]['convo_stride'] maxpool_size = configs_for_all_convo_layers[layer_index]['maxpool_size'] if self.debug_config: print("\n in_channels=%d out_channels=%d kernel_size=%s stride=%s \ maxpool_size=%s" % (in_channels, out_channels, str(kernel_size), str(stride), str(maxpool_size))) conv_layers.append( nn.Conv2d( in_channels,out_channels,kernel_size,stride=stride,padding=padding) ) conv_layers.append( nn.MaxPool2d( maxpool_size ) ) conv_layers.append( nn.ReLU() ), in_channels_for_next_layer = out_channels return conv_layers def build_fc_layers(self): fc_layers = nn.ModuleList() for layer_index in range(len(self.fc_layers_config) - 1): fc_layers.append( nn.Linear( self.fc_layers_config[layer_index], self.fc_layers_config[layer_index+1] ) ) return fc_layers def load_cifar_10_dataset(self): ''' In the code shown below, the call to "ToTensor()" converts the usual int range 0-255 for pixel values to 0-1.0 float vals and then the call to "Normalize()" changes the range to -1.0-1.0 float vals. For additional explanation of the call to "tvt.ToTensor()", see Slide 31 of my Week 2 slides at the DL course website. And see Slides 32 and 33 for the syntax "tvt.Normalize((0.5, 0.5, 0.5), (0.5, 0.5, 0.5))". In this call, the three numbers in the first tuple change the means in the three color channels and the three numbers in the second tuple change the standard deviations according to the formula: image_channel_val = (image_channel_val - mean) / std The end result is that the values in the image tensor will be normalized to fall between -1.0 and +1.0. If needed we can do inverse normalization by image_channel_val = (image_channel_val * std) + mean ''' ## But then the call to Normalize() changes the range to -1.0-1.0 float vals. transform = tvt.Compose([tvt.ToTensor(), tvt.Normalize((0.5, 0.5, 0.5), (0.5, 0.5, 0.5))]) ## accuracy: 51% ## Define where the training and the test datasets are located: train_data_loc = torchvision.datasets.CIFAR10(root=self.dataroot, train=True, download=True, transform=transform) test_data_loc = torchvision.datasets.CIFAR10(root=self.dataroot, train=False, download=True, transform=transform) ## Now create the data loaders: self.train_data_loader = torch.utils.data.DataLoader(train_data_loc,batch_size=self.batch_size, shuffle=True, num_workers=2) self.test_data_loader = torch.utils.data.DataLoader(test_data_loc,batch_size=self.batch_size, shuffle=False, num_workers=2) def load_cifar_10_dataset_with_augmentation(self): ''' In general, we want to do data augmentation for training: ''' transform_train = tvt.Compose([ tvt.RandomCrop(32, padding=4), tvt.RandomHorizontalFlip(), tvt.ToTensor(), tvt.Normalize((0.5, 0.5, 0.5), (0.5, 0.5, 0.5))]) ## Don't need any augmentation for the test data: transform_test = tvt.Compose([ tvt.ToTensor(), tvt.Normalize((0.5, 0.5, 0.5), (0.5, 0.5, 0.5))]) ## Define where the training and the test datasets are located train_data_loc = torchvision.datasets.CIFAR10( root=self.dataroot, train=True, download=True, transform=transform_train ) test_data_loc = torchvision.datasets.CIFAR10( root=self.dataroot, train=False, download=True, transform=transform_test ) ## Now create the data loaders: self.train_data_loader = torch.utils.data.DataLoader(train_data_loc, batch_size=self.batch_size, shuffle=True, num_workers=2) self.test_data_loader = torch.utils.data.DataLoader(test_data_loc, batch_size=self.batch_size, shuffle=False, num_workers=2) def imshow(self, img): ''' called by display_tensor_as_image() for displaying the image ''' img = img / 2 + 0.5 # unnormalize npimg = img.numpy() plt.imshow(np.transpose(npimg, (1, 2, 0))) plt.show() class Net(nn.Module): def __init__(self, convo_layers, fc_layers): super(DLStudio.Net, self).__init__() self.my_modules_convo = convo_layers self.my_modules_fc = fc_layers def forward(self, x): for m in self.my_modules_convo: x = m(x) x = x.view(x.shape[0], -1) for m in self.my_modules_fc: x = m(x) return x def run_code_for_training(self, net, display_images=False): filename_for_out = "performance_numbers_" + str(self.epochs) + ".txt" FILE = open(filename_for_out, 'w') net = copy.deepcopy(net) net = net.to(self.device) criterion = nn.CrossEntropyLoss() optimizer = optim.SGD(net.parameters(), lr=self.learning_rate, momentum=self.momentum) print("\n\nStarting training loop...") start_time = time.perf_counter() loss_tally = [] elapsed_time = 0.0 for epoch in range(self.epochs): print("") running_loss = 0.0 for i, data in enumerate(self.train_data_loader): inputs, labels = data if i % 1000 == 999: current_time = time.perf_counter() elapsed_time = current_time - start_time print("\n\n[epoch:%d/%d iter=%4d elapsed_time=%5d secs] Ground Truth: " % (epoch+1, self.epochs, i+1, elapsed_time) + ' '.join('%10s' % self.class_labels[labels[j]] for j in range(self.batch_size))) inputs = inputs.to(self.device) labels = labels.to(self.device) ## Since PyTorch likes to construct dynamic computational graphs, we need to ## zero out the previously calculated gradients for the learnable parameters: optimizer.zero_grad() outputs = net(inputs) loss = criterion(outputs, labels) running_loss += loss.item() if i % 1000 == 999: _, predicted = torch.max(outputs.data, 1) print("[epoch:%d/%d iter=%4d elapsed_time=%5d secs] Predicted Labels: " % (epoch+1, self.epochs, i+1, elapsed_time ) + ' '.join('%10s' % self.class_labels[predicted[j]] for j in range(self.batch_size))) avg_loss = running_loss / float(1000) loss_tally.append(avg_loss) print("[epoch:%d/%d iter=%4d elapsed_time=%5d secs] Loss: %.3f" % (epoch+1, self.epochs, i+1, elapsed_time, avg_loss)) FILE.write("%.3f\n" % avg_loss) FILE.flush() running_loss = 0.0 if display_images: logger = logging.getLogger() old_level = logger.level logger.setLevel(100) plt.figure(figsize=[6,3]) plt.imshow(np.transpose(torchvision.utils.make_grid(inputs, normalize=False, padding=3, pad_value=255).cpu(), (1,2,0))) plt.show() logger.setLevel(old_level) loss.backward() optimizer.step() print("\nFinished Training\n") self.save_model(net) plt.figure(figsize=(10,5)) plt.title("Labeling Loss vs. Iterations") plt.plot(loss_tally) plt.xlabel("iterations") plt.ylabel("loss") plt.legend(["Plot of loss versus iterations"], fontsize="x-large") plt.savefig("loss_vs_iterations.png") plt.show() def display_tensor_as_image(self, tensor, title=""): ''' This method converts the argument tensor into a photo image that you can display in your terminal screen. It can convert tensors of three different shapes into images: (3,H,W), (1,H,W), and (H,W), where H, for height, stands for the number of pixels in the vertical direction and W, for width, for the same along the horizontal direction. When the first element of the shape is 3, that means that the tensor represents a color image in which each pixel in the (H,W) plane has three values for the three color channels. On the other hand, when the first element is 1, that stands for a tensor that will be shown as a grayscale image. And when the shape is just (H,W), that is automatically taken to be for a grayscale image. ''' tensor_range = (torch.min(tensor).item(), torch.max(tensor).item()) if tensor_range == (-1.0,1.0): ## The tensors must be between 0.0 and 1.0 for the display: print("\n\n\nimage un-normalization called") tensor = tensor/2.0 + 0.5 # unnormalize plt.figure(title) ### The call to plt.imshow() shown below needs a numpy array. We must also ### transpose the array so that the number of channels (the same thing as the ### number of color planes) is in the last element. For a tensor, it would be in ### the first element. if tensor.shape[0] == 3 and len(tensor.shape) == 3: # plt.imshow( tensor.numpy().transpose(1,2,0) ) plt.imshow( tensor.numpy().transpose(1,2,0) ) ### If the grayscale image was produced by calling torchvision.transform's ### ".ToPILImage()", and the result converted to a tensor, the tensor shape will ### again have three elements in it, however the first element that stands for ### the number of channels will now be 1 elif tensor.shape[0] == 1 and len(tensor.shape) == 3: tensor = tensor[0,:,:] plt.imshow( tensor.numpy(), cmap = 'gray' ) ### For any one color channel extracted from the tensor representation of a color ### image, the shape of the tensor will be (W,H): elif len(tensor.shape) == 2: plt.imshow( tensor.numpy(), cmap = 'gray' ) else: sys.exit("\n\n\nfrom 'display_tensor_as_image()': tensor for image is ill formed -- aborting") plt.show() def check_a_sampling_of_images(self): ''' Displays the first batch_size number of images in your dataset. ''' dataiter = iter(self.train_data_loader) images, labels = dataiter.next() # Since negative pixel values make no sense for display, setting the 'normalize' # option to True will change the range back from (-1.0,1.0) to (0.0,1.0): self.display_tensor_as_image(torchvision.utils.make_grid(images, normalize=True)) # Print class labels for the images shown: print(' '.join('%5s' % self.class_labels[labels[j]] for j in range(self.batch_size))) def save_model(self, model): ''' Save the trained model to a disk file ''' torch.save(model.state_dict(), self.path_saved_model) def run_code_for_testing(self, net, display_images=False): net.load_state_dict(torch.load(self.path_saved_model)) net = net.eval() net = net.to(self.device) ## In what follows, in addition to determining the predicted label for each test ## image, we will also compute some stats to measure the overall performance of ## the trained network. This we will do in two different ways: For each class, ## we will measure how frequently the network predicts the correct labels. In ## addition, we will compute the confusion matrix for the predictions. filename_for_results = "classification_results_" + str(self.epochs) + ".txt" FILE = open(filename_for_results, 'w') correct = 0 total = 0 confusion_matrix = torch.zeros(len(self.class_labels), len(self.class_labels)) class_correct = [0] * len(self.class_labels) class_total = [0] * len(self.class_labels) with torch.no_grad(): for i,data in enumerate(self.test_data_loader): ## data is set to the images and the labels for one batch at a time: images, labels = data images = images.to(self.device) labels = labels.to(self.device) if i % 1000 == 999: print("\n\n[i=%d:] Ground Truth: " % (i+1) + ' '.join('%5s' % self.class_labels[labels[j]] for j in range(self.batch_size))) outputs = net(images) ## max() returns two things: the max value and its index in the 10 element ## output vector. We are only interested in the index --- since that is ## essentially the predicted class label: _, predicted = torch.max(outputs.data, 1)# # if display_images and i % 1000 == 999: if i % 1000 == 999: print("[i=%d:] Predicted Labels: " % (i+1) + ' '.join('%5s' % self.class_labels[predicted[j]] for j in range(self.batch_size))) logger = logging.getLogger() old_level = logger.level if display_images: logger.setLevel(100) plt.figure(figsize=[6,3]) plt.imshow(np.transpose(torchvision.utils.make_grid(images, normalize=False, padding=3, pad_value=255).cpu(), (1,2,0))) plt.show() logger.setLevel(old_level) for label,prediction in zip(labels,predicted): confusion_matrix[label][prediction] += 1 total += labels.size(0) correct += (predicted == labels).sum().item() ## comp is a list of size batch_size of "True" and "False" vals comp = predicted == labels for j in range(self.batch_size): label = labels[j] ## The following works because, in a numeric context, the boolean value ## "False" is the same as number 0 and the boolean value True is the ## same as number 1. For that reason "4 + True" will evaluate to 5 and ## "4 + False" will evaluate to 4. Also, "1 == True" evaluates to "True" ## "1 == False" evaluates to "False". However, note that "1 is True" ## evaluates to "False" because the operator "is" does not provide a ## numeric context for "True". And so on. In the statement that follows, ## while c[j].item() will either return "False" or "True", for the ## addition operator, Python will use the values 0 and 1 instead. class_correct[label] += comp[j].item() class_total[label] += 1 for j in range(len(self.class_labels)): print('Prediction accuracy for %5s : %2d %%' % (self.class_labels[j], 100 * class_correct[j] / class_total[j])) FILE.write('\n\nPrediction accuracy for %5s : %2d %%\n' % (self.class_labels[j], 100 * class_correct[j] / class_total[j])) print("\n\n\nOverall accuracy of the network on the 10000 test images: %d %%" % (100 * correct / float(total))) FILE.write("\n\n\nOverall accuracy of the network on the 10000 test images: %d %%\n" % (100 * correct / float(total))) print("\n\nDisplaying the confusion matrix:\n") FILE.write("\n\nDisplaying the confusion matrix:\n\n") out_str = " " for j in range(len(self.class_labels)): out_str += "%7s" % self.class_labels[j] print(out_str + "\n") FILE.write(out_str + "\n\n") for i,label in enumerate(self.class_labels): out_percents = [100 * confusion_matrix[i,j] / float(class_total[i]) for j in range(len(self.class_labels))] out_percents = ["%.2f" % item.item() for item in out_percents] out_str = "%6s: " % self.class_labels[i] for j in range(len(self.class_labels)): out_str += "%7s" % out_percents[j] print(out_str) FILE.write(out_str + "\n") FILE.close() ###%%% ######################################################################################## ############### Start Definition of Inner Class ExperimentsWithSequential ############# class ExperimentsWithSequential(nn.Module): """ Demonstrates how to use the torch.nn.Sequential container class Class Path: DLStudio -> ExperimentsWithSequential """ def __init__(self, dl_studio ): super(DLStudio.ExperimentsWithSequential, self).__init__() self.dl_studio = dl_studio def load_cifar_10_dataset(self): self.dl_studio.load_cifar_10_dataset() def load_cifar_10_dataset_with_augmentation(self): self.dl_studio.load_cifar_10_dataset_with_augmentation() class Net(nn.Module): """ To see if the DLStudio class would work with any network that a user may want to experiment with, I copy-and-pasted the network shown below from Zhenye's GitHub blog: https://github.com/Zhenye-Na/blog Class Path: DLStudio -> ExperimentsWithSequential -> Net """ def __init__(self): super(DLStudio.ExperimentsWithSequential.Net, self).__init__() self.conv_seqn = nn.Sequential( # Conv Layer block 1: nn.Conv2d(in_channels=3, out_channels=32, kernel_size=3, padding=1), nn.BatchNorm2d(32), nn.ReLU(inplace=True), nn.Conv2d(in_channels=32, out_channels=64, kernel_size=3, padding=1), nn.ReLU(inplace=True), nn.MaxPool2d(kernel_size=2, stride=2), # Conv Layer block 2: nn.Conv2d(in_channels=64, out_channels=128, kernel_size=3, padding=1), nn.BatchNorm2d(128), nn.ReLU(inplace=True), nn.Conv2d(in_channels=128, out_channels=128, kernel_size=3, padding=1), nn.ReLU(inplace=True), nn.MaxPool2d(kernel_size=2, stride=2), nn.Dropout2d(p=0.05), # Conv Layer block 3: nn.Conv2d(in_channels=128, out_channels=256, kernel_size=3, padding=1), nn.BatchNorm2d(256), nn.ReLU(inplace=True), nn.Conv2d(in_channels=256, out_channels=256, kernel_size=3, padding=1), nn.ReLU(inplace=True), nn.MaxPool2d(kernel_size=2, stride=2), ) self.fc_seqn = nn.Sequential( nn.Dropout(p=0.1), nn.Linear(4096, 1024), nn.ReLU(inplace=True), nn.Linear(1024, 512), nn.ReLU(inplace=True), nn.Dropout(p=0.1), nn.Linear(512, 10) ) def forward(self, x): x = self.conv_seqn(x) # flatten x = x.view(x.shape[0], -1) x = self.fc_seqn(x) return x def run_code_for_training(self, net): self.dl_studio.run_code_for_training(net) def save_model(self, model): ''' Save the trained model to a disk file ''' torch.save(model.state_dict(), self.dl_studio.path_saved_model) def run_code_for_testing(self, model): self.dl_studio.run_code_for_testing(model) ###%%% ######################################################################################## ################## Start Definition of Inner Class ExperimentsWithCIFAR ############### class ExperimentsWithCIFAR(nn.Module): """ Class Path: DLStudio -> ExperimentsWithCIFAR """ def __init__(self, dl_studio ): super(DLStudio.ExperimentsWithCIFAR, self).__init__() self.dl_studio = dl_studio def load_cifar_10_dataset(self): self.dl_studio.load_cifar_10_dataset() def load_cifar_10_dataset_with_augmentation(self): self.dl_studio.load_cifar_10_dataset_with_augmentation() ## You can instantiate two different types of networks when experimenting with ## the inner class ExperimentsWithCIFAR. The network shown below is from the ## PyTorch tutorial ## ## https://pytorch.org/tutorials/beginner/blitz/cifar10_tutorial.html ## class Net(nn.Module): """ Class Path: DLStudio -> ExperimentsWithCIFAR -> Net """ def __init__(self): super(DLStudio.ExperimentsWithCIFAR.Net, self).__init__() self.conv1 = nn.Conv2d(3, 6, 5) self.conv2 = nn.Conv2d(6, 16, 5) self.fc1 = nn.Linear(16 * 5 * 5, 120) self.fc2 = nn.Linear(120, 84) self.fc3 = nn.Linear(84, 10) def forward(self, x): x = nn.MaxPool2d(2,2)(F.relu(self.conv1(x))) x = nn.MaxPool2d(2,2)(F.relu(self.conv2(x))) x = x.view( x.shape[0], - 1 ) x = F.relu(self.fc1(x)) x = F.relu(self.fc2(x)) x = self.fc3(x) return x ## Instead of using the network shown above, you can also use the network shown below. ## if you are playing with the ExperimentsWithCIFAR inner class. If that's what you ## want to do, in the script "playing_with_cifar10.py" in the Examples directory, ## you will need to replace the statement ## model = exp_cifar.Net() ## by the statement ## model = exp_cifar.Net2() ## class Net2(nn.Module): """ Class Path: DLStudio -> ExperimentsWithCIFAR -> Net2 """ def __init__(self): """ I created this network class just to see if it was possible to simply calculate the size of the first of the fully connected layers from strides in the convo layers up to that point and from the out_channels used in the top-most convo layer. In what you see below, I am keeping track of all the strides by pushing them into the array 'strides'. Subsequently, in the formula shown in line (A), I use the product of all strides and the number of out_channels for the topmost layer to compute the size of the first fully-connected layer. """ super(DLStudio.ExperimentsWithCIFAR.Net2, self).__init__() self.relu = nn.ReLU() strides = [] patch_size = 2 ## conv1: out_ch, ker_size, conv_stride, pool_stride = 128,5,1,2 self.conv1 = nn.Conv2d(3, out_ch, (ker_size,ker_size), padding=(ker_size-1)//2) self.pool1 = nn.MaxPool2d(patch_size, pool_stride) strides += (conv_stride, pool_stride) ## conv2: in_ch = out_ch out_ch, ker_size, conv_stride, pool_stride = 128,3,1,2 self.conv2 = nn.Conv2d(in_ch, out_ch, ker_size, padding=(ker_size-1)//2) self.pool2 = nn.MaxPool2d(patch_size, pool_stride) strides += (conv_stride, pool_stride) ## conv3: in_ch = out_ch out_ch, ker_size, conv_stride, pool_stride = in_ch,2,1,1 self.conv3 = nn.Conv2d(in_ch, out_ch, ker_size, padding=1) self.pool3 = nn.MaxPool2d(patch_size, pool_stride) ## figure out the number of nodes needed for entry into fc: in_size_for_fc = out_ch * (32 // np.prod(strides)) ** 2 ## (A) self.in_size_for_fc = in_size_for_fc self.fc1 = nn.Linear(in_size_for_fc, 150) self.fc2 = nn.Linear(150, 100) self.fc3 = nn.Linear(100, 10) def forward(self, x): ## We know that forward() begins its with work x shaped as (4,3,32,32) where ## 4 is the batch size, 3 in_channels, and where the input image size is 32x32. x = self.relu(self.conv1(x)) x = self.pool1(x) x = self.relu(self.conv2(x)) x = self.pool2(x) x = self.pool3(self.relu(self.conv3(x))) x = x.view( x.shape[0], - 1 ) x = self.relu(self.fc1( x )) x = self.relu(self.fc2( x )) x = self.fc3(x) return x def run_code_for_training(self, net, display_images=False): self.dl_studio.run_code_for_training(net, display_images) def save_model(self, model): ''' Save the trained model to a disk file ''' torch.save(model.state_dict(), self.dl_studio.path_saved_model) def run_code_for_testing(self, model, display_images=False): self.dl_studio.run_code_for_testing(model, display_images) ###%%% ######################################################################################## ###### Start Definition of Inner Class BMEnet for Illustrating Skip Connections ###### class BMEnet(nn.Module): """ This educational class is meant for illustrating the concepts related to the use of skip connections in neural network. It is now well known that deep networks are difficult to train because of the vanishing gradients problem. What that means is that as the depth of network increases, the loss gradients calculated for the early layers become more and more muted, which suppresses the learning of the parameters in those layers. An important mitigation strategy for addressing this problem consists of creating a CNN using blocks with skip connections. With the code shown in this inner class of the module, you can now experiment with skip connections in a CNN to see how a deep network with this feature might improve the classification results. As you will see in the code shown below, the network that allows you to construct a CNN with skip connections is named BMEnet. As shown in the script playing_with_skip_connections.py in the Examples directory of the distribution, you can easily create a CNN with arbitrary depth just by using the "depth" constructor option for the BMEnet class. The basic block of the network constructed by BMEnet is called SkipBlock which, very much like the BasicBlock in ResNet-18, has a couple of convolutional layers whose output is combined with the input to the block. Note that the value given to the "depth" constructor option for the BMEnet class does NOT translate directly into the actual depth of the CNN. [Again, see the script playing_with_skip_connections.py in the Examples directory for how to use this option.] The value of "depth" is translated into how many "same input and output channels" and the "same input and output sizes" instances of SkipBlock to use between successive instances of downsampling and channel-doubling instances of SkipBlock. Class Path: DLStudio -> BMEnet """ def __init__(self, dl_studio, skip_connections=True, depth=8): super(DLStudio.BMEnet, self).__init__() self.dl_studio = dl_studio self.depth = depth image_size = dl_studio.image_size num_ds = 0 ## num_ds stands for number of downsampling steps self.conv = nn.Conv2d(3, 64, 3, padding=1) self.skip64_arr = nn.ModuleList() for i in range(self.depth): self.skip64_arr.append(DLStudio.BMEnet.SkipBlock(64, 64, skip_connections=skip_connections)) self.skip64to128ds = DLStudio.BMEnet.SkipBlock(64, 128, downsample=True, skip_connections=skip_connections ) num_ds += 1 self.skip128_arr = nn.ModuleList() for i in range(self.depth): self.skip128_arr.append(DLStudio.BMEnet.SkipBlock(128, 128, skip_connections=skip_connections)) self.skip128to256ds = DLStudio.BMEnet.SkipBlock(128, 256, downsample=True, skip_connections=skip_connections ) num_ds += 1 self.skip256_arr = nn.ModuleList() for i in range(self.depth): self.skip256_arr.append(DLStudio.BMEnet.SkipBlock(256, 256, skip_connections=skip_connections)) self.fc1 = nn.Linear( (image_size[0]// (2 ** num_ds)) * (image_size[1]//(2 ** num_ds)) * 256, 1000) self.fc2 = nn.Linear(1000, 10) def forward(self, x): x = nn.functional.relu(self.conv(x)) for skip64 in self.skip64_arr: x = skip64(x) x = self.skip64to128ds(x) for skip128 in self.skip128_arr: x = skip128(x) x = self.skip128to256ds(x) for skip256 in self.skip256_arr: x = skip256(x) x = x.view( x.shape[0], - 1 ) x = nn.functional.relu(self.fc1(x)) x = self.fc2(x) return x def load_cifar_10_dataset(self): self.dl_studio.load_cifar_10_dataset() def load_cifar_10_dataset_with_augmentation(self): self.dl_studio.load_cifar_10_dataset_with_augmentation() class SkipBlock(nn.Module): """ Class Path: DLStudio -> BMEnet -> SkipBlock """ def __init__(self, in_ch, out_ch, downsample=False, skip_connections=True): super(DLStudio.BMEnet.SkipBlock, self).__init__() self.downsample = downsample self.skip_connections = skip_connections self.in_ch = in_ch self.out_ch = out_ch self.convo1 = nn.Conv2d(in_ch, in_ch, 3, stride=1, padding=1) self.convo2 = nn.Conv2d(in_ch, out_ch, 3, stride=1, padding=1) self.bn1 = nn.BatchNorm2d(in_ch) self.bn2 = nn.BatchNorm2d(out_ch) self.in2out = nn.Conv2d(in_ch, out_ch, 1) if downsample: ## Setting stride to 2 and kernel_size to 1 amounts to retaining every ## other pixel in the image --- which halves the size of the image: self.downsampler1 = nn.Conv2d(in_ch, in_ch, 1, stride=2) self.downsampler2 = nn.Conv2d(out_ch, out_ch, 1, stride=2) def forward(self, x): identity = x out = self.convo1(x) out = self.bn1(out) out = nn.functional.relu(out) out = self.convo2(out) out = self.bn2(out) out = nn.functional.relu(out) if self.downsample: identity = self.downsampler1(identity) out = self.downsampler2(out) if self.skip_connections: if (self.in_ch == self.out_ch) and (self.downsample is False): out = out + identity elif (self.in_ch != self.out_ch) and (self.downsample is False): identity = self.in2out( identity ) out = out + identity elif (self.in_ch != self.out_ch) and (self.downsample is True): out = out + torch.cat((identity, identity), dim=1) return out def run_code_for_training(self, net, display_images=False): self.dl_studio.run_code_for_training(net, display_images) def save_model(self, model): ''' Save the trained model to a disk file ''' torch.save(model.state_dict(), self.dl_studio.path_saved_model) def run_code_for_testing(self, model, display_images=False): self.dl_studio.run_code_for_testing(model, display_images=False) ###%%% ######################################################################################## ################# Start Definition of Inner Class CustomDataLoading ################## class CustomDataLoading(nn.Module): """ This is a testbed for experimenting with a completely grounds-up attempt at designing a custom data loader. Ordinarily, if the basic format of how the dataset is stored is similar to one of the datasets that the Torchvision module knows about, you can go ahead and use that for your own dataset. At worst, you may need to carry out some light customizations depending on the number of classes involved, etc. However, if the underlying dataset is stored in a manner that does not look like anything in Torchvision, you have no choice but to supply yourself all of the data loading infrastructure. That is what this inner class of the DLStudio module is all about. The custom data loading exercise here is related to a dataset called PurdueShapes5 that contains 32x32 images of binary shapes belonging to the following five classes: 1. rectangle 2. triangle 3. disk 4. oval 5. star The dataset was generated by randomizing the sizes and the orientations of these five patterns. Since the patterns are rotated with a very simple non-interpolating transform, just the act of random rotations can introduce boundary and even interior noise in the patterns. Each 32x32 image is stored in the dataset as the following list: [R, G, B, Bbox, Label] where R : is a 1024 element list of the values for the red component of the color at all the pixels B : the same as above but for the green component of the color G : the same as above but for the blue component of the color Bbox : a list like [x1,y1,x2,y2] that defines the bounding box for the object in the image Label : the shape of the object I serialize the dataset with Python's pickle module and then compress it with the gzip module. You will find the following dataset directories in the "data" subdirectory of Examples in the DLStudio distro: PurdueShapes5-10000-train.gz PurdueShapes5-1000-test.gz PurdueShapes5-20-train.gz PurdueShapes5-20-test.gz The number that follows the main name string "PurdueShapes5-" is for the number of images in the dataset. You will find the last two datasets, with 20 images each, useful for debugging your logic for object detection and bounding-box regression. Class Path: DLStudio -> CustomDataLoading """ def __init__(self, dl_studio, dataserver_train=None, dataserver_test=None, dataset_file_train=None, dataset_file_test=None): super(DLStudio.CustomDataLoading, self).__init__() self.dl_studio = dl_studio self.dataserver_train = dataserver_train self.dataserver_test = dataserver_test class PurdueShapes5Dataset(torch.utils.data.Dataset): """ Class Path: DLStudio -> CustomDataLoading -> PurdueShapes5Dataset """ def __init__(self, dl_studio, train_or_test, dataset_file): super(DLStudio.CustomDataLoading.PurdueShapes5Dataset, self).__init__() if train_or_test == 'train' and dataset_file == "PurdueShapes5-10000-train.gz": if os.path.exists("torch_saved_PurdueShapes5-10000_dataset.pt") and \ os.path.exists("torch_saved_PurdueShapes5_label_map.pt"): print("\nLoading training data from the torch-saved archive") self.dataset = torch.load("torch_saved_PurdueShapes5-10000_dataset.pt") self.label_map = torch.load("torch_saved_PurdueShapes5_label_map.pt") # reverse the key-value pairs in the label dictionary: self.class_labels = dict(map(reversed, self.label_map.items())) else: print("""\n\n\nLooks like this is the first time you will be loading in\n""" """the dataset for this script. First time loading could take\n""" """a minute or so. Any subsequent attempts will only take\n""" """a few seconds.\n\n\n""") root_dir = dl_studio.dataroot f = gzip.open(root_dir + dataset_file, 'rb') dataset = f.read() self.dataset, self.label_map = pickle.loads(dataset, encoding='latin1') torch.save(self.dataset, "torch_saved_PurdueShapes5-10000_dataset.pt") torch.save(self.label_map, "torch_saved_PurdueShapes5_label_map.pt") # reverse the key-value pairs in the label dictionary: self.class_labels = dict(map(reversed, self.label_map.items())) else: root_dir = dl_studio.dataroot f = gzip.open(root_dir + dataset_file, 'rb') dataset = f.read() self.dataset, self.label_map = pickle.loads(dataset, encoding='latin1') # reverse the key-value pairs in the label dictionary: self.class_labels = dict(map(reversed, self.label_map.items())) def __len__(self): return len(self.dataset) def __getitem__(self, idx): r = np.array( self.dataset[idx][0] ) g = np.array( self.dataset[idx][1] ) b = np.array( self.dataset[idx][2] ) R,G,B = r.reshape(32,32), g.reshape(32,32), b.reshape(32,32) im_tensor = torch.zeros(3,32,32, dtype=torch.float) im_tensor[0,:,:] = torch.from_numpy(R) im_tensor[1,:,:] = torch.from_numpy(G) im_tensor[2,:,:] = torch.from_numpy(B) sample = {'image' : im_tensor, 'bbox' : self.dataset[idx][3], 'label' : self.dataset[idx][4] } return sample def load_PurdueShapes5_dataset(self, dataserver_train, dataserver_test ): transform = tvt.Compose([tvt.ToTensor(), tvt.Normalize((0.5, 0.5, 0.5), (0.5, 0.5, 0.5))]) self.train_dataloader = torch.utils.data.DataLoader(dataserver_train, batch_size=self.dl_studio.batch_size,shuffle=True, num_workers=4) self.test_dataloader = torch.utils.data.DataLoader(dataserver_test, batch_size=self.dl_studio.batch_size,shuffle=False, num_workers=4) class ECEnet(nn.Module): """ Class Path: DLStudio -> CustomDataloading -> ECEnet """ def __init__(self, dl_studio, skip_connections=True, depth=8): super(DLStudio.CustomDataLoading.ECEnet, self).__init__() self.dl_studio = dl_studio self.depth = depth image_size = dl_studio.image_size num_ds = 0 ## num_ds stands for number of downsampling steps self.conv = nn.Conv2d(3, 64, 3, padding=1) self.skip64_arr = nn.ModuleList() for i in range(self.depth): self.skip64_arr.append(DLStudio.CustomDataLoading.SkipBlock2(64, 64, skip_connections=skip_connections)) self.skip64to128ds = DLStudio.CustomDataLoading.SkipBlock2(64, 128, downsample=True, skip_connections=skip_connections ) num_ds += 1 self.skip128_arr = nn.ModuleList() for i in range(self.depth): self.skip128_arr.append(DLStudio.CustomDataLoading.SkipBlock2(128, 128, skip_connections=skip_connections)) self.skip128to256ds = DLStudio.CustomDataLoading.SkipBlock2(128, 256, downsample=True, skip_connections=skip_connections ) num_ds += 1 self.skip256_arr = nn.ModuleList() for i in range(self.depth): self.skip256_arr.append(DLStudio.CustomDataLoading.SkipBlock2(256, 256, skip_connections=skip_connections)) self.fc1 = nn.Linear( (image_size[0]// (2 ** num_ds)) * (image_size[1]//(2 ** num_ds)) * 256, 1000) self.fc2 = nn.Linear(1000, 10) def forward(self, x): x = nn.functional.relu(self.conv(x)) for skip64 in self.skip64_arr: x = skip64(x) x = self.skip64to128ds(x) for skip128 in self.skip128_arr: x = skip128(x) x = self.skip128to256ds(x) for skip256 in self.skip256_arr: x = skip256(x) x = x.view( x.shape[0], - 1 ) x = nn.functional.relu(self.fc1(x)) x = self.fc2(x) return x def load_cifar_10_dataset(self): self.dl_studio.load_cifar_10_dataset() def load_cifar_10_dataset_with_augmentation(self): self.dl_studio.load_cifar_10_dataset_with_augmentation() class SkipBlock2(nn.Module): """ Class Path: DLStudio -> CustomDataloading -> SkipBlock """ def __init__(self, in_ch, out_ch, downsample=False, skip_connections=True): super(DLStudio.CustomDataLoading.SkipBlock2, self).__init__() self.downsample = downsample self.skip_connections = skip_connections self.in_ch = in_ch self.out_ch = out_ch self.convo1 = nn.Conv2d(in_ch, in_ch, 3, stride=1, padding=1) self.convo2 = nn.Conv2d(in_ch, out_ch, 3, stride=1, padding=1) self.bn1 = nn.BatchNorm2d(in_ch) self.bn2 = nn.BatchNorm2d(out_ch) self.in2out = nn.Conv2d(in_ch, out_ch, 1) if downsample: ## Setting stride to 2 and kernel_size to 1 amounts to retaining every ## other pixel in the image --- which halves the size of the image: self.downsampler1 = nn.Conv2d(in_ch, in_ch, 1, stride=2) self.downsampler2 = nn.Conv2d(out_ch, out_ch, 1, stride=2) def forward(self, x): identity = x out = self.convo1(x) out = self.bn1(out) out = nn.functional.relu(out) out = self.convo2(out) out = self.bn2(out) out = nn.functional.relu(out) if self.downsample: identity = self.downsampler1(identity) out = self.downsampler2(out) if self.skip_connections: if (self.in_ch == self.out_ch) and (self.downsample is False): out = out + identity elif (self.in_ch != self.out_ch) and (self.downsample is False): identity = self.in2out( identity ) out = out + identity elif (self.in_ch != self.out_ch) and (self.downsample is True): out = out + torch.cat((identity, identity), dim=1) return out def run_code_for_training_with_custom_loading(self, net): filename_for_out = "performance_numbers_" + str(self.dl_studio.epochs) + ".txt" FILE = open(filename_for_out, 'w') net = copy.deepcopy(net) net = net.to(self.dl_studio.device) criterion = nn.CrossEntropyLoss() optimizer = optim.SGD(net.parameters(), lr=self.dl_studio.learning_rate, momentum=self.dl_studio.momentum) for epoch in range(self.dl_studio.epochs): running_loss = 0.0 for i, data in enumerate(self.train_dataloader): inputs, bounding_box, labels = data['image'], data['bbox'], data['label'] if self.dl_studio.debug_train and i % 1000 == 999: print("\n\n\nlabels: %s" % str(labels)) print("\n\n\ntype of labels: %s" % type(labels)) print("\n\n[iter=%d:] Ground Truth: " % (i+1) + ' '.join('%5s' % self.dataserver_train.class_labels[labels[j].item()] for j in range(self.dl_studio.batch_size))) inputs = inputs.to(self.dl_studio.device) labels = labels.to(self.dl_studio.device) optimizer.zero_grad() outputs = net(inputs) loss = criterion(outputs, labels) if self.dl_studio.debug_train and i % 1000 == 999: _, predicted = torch.max(outputs.data, 1) print("[iter=%d:] Predicted Labels: " % (i+1) + ' '.join('%5s' % self.dataserver.class_labels[predicted[j]] for j in range(self.dl_studio.batch_size))) self.dl_studio.display_tensor_as_image(torchvision.utils.make_grid( inputs, normalize=True), "see terminal for TRAINING results at iter=%d" % (i+1)) loss.backward() optimizer.step() running_loss += loss.item() if i % 1000 == 999: avg_loss = running_loss / float(1000) print("[epoch:%d, batch:%5d] loss: %.3f" % (epoch + 1, i + 1, avg_loss)) FILE.write("%.3f\n" % avg_loss) FILE.flush() running_loss = 0.0 print("\nFinished Training\n") self.save_model(net) def save_model(self, model): ''' Save the trained model to a disk file ''' torch.save(model.state_dict(), self.dl_studio.path_saved_model) def run_code_for_testing_with_custom_loading(self, net): net.load_state_dict(torch.load(self.dl_studio.path_saved_model)) correct = 0 total = 0 confusion_matrix = torch.zeros(len(self.dataserver_train.class_labels), len(self.dataserver_train.class_labels)) class_correct = [0] * len(self.dataserver_train.class_labels) class_total = [0] * len(self.dataserver_train.class_labels) with torch.no_grad(): for i, data in enumerate(self.test_dataloader): images, bounding_box, labels = data['image'], data['bbox'], data['label'] labels = labels.tolist() if self.dl_studio.debug_test and i % 1000 == 0: print("\n\n[i=%d:] Ground Truth: " %i + ' '.join('%10s' % self.dataserver_train.class_labels[labels[j]] for j in range(self.dl_studio.batch_size))) outputs = net(images) ## max() returns two things: the max value and its index in the 10 element ## output vector. We are only interested in the index --- since that is ## essentially the predicted class label: _, predicted = torch.max(outputs.data, 1) predicted = predicted.tolist() if self.dl_studio.debug_test and i % 1000 == 0: print("[i=%d:] Predicted Labels: " %i + ' '.join('%10s' % self.dataserver_train.class_labels[predicted[j]] for j in range(self.dl_studio.batch_size))) self.dl_studio.display_tensor_as_image( torchvision.utils.make_grid(images, normalize=True), "see terminal for test results at i=%d" % i) for label,prediction in zip(labels,predicted): confusion_matrix[label][prediction] += 1 total += len(labels) correct += [predicted[ele] == labels[ele] for ele in range(len(predicted))].count(True) comp = [predicted[ele] == labels[ele] for ele in range(len(predicted))] for j in range(self.dl_studio.batch_size): label = labels[j] class_correct[label] += comp[j] class_total[label] += 1 print("\n") for j in range(len(self.dataserver_train.class_labels)): print('Prediction accuracy for %5s : %2d %%' % ( self.dataserver_train.class_labels[j], 100 * class_correct[j] / class_total[j])) print("\n\n\nOverall accuracy of the network on the 10000 test images: %d %%" % (100 * correct / float(total))) print("\n\nDisplaying the confusion matrix:\n") out_str = " " for j in range(len(self.dataserver_train.class_labels)): out_str += "%15s" % self.dataserver_train.class_labels[j] print(out_str + "\n") for i,label in enumerate(self.dataserver_train.class_labels): out_percents = [100 * confusion_matrix[i,j] / float(class_total[i]) for j in range(len(self.dataserver_train.class_labels))] out_percents = ["%.2f" % item.item() for item in out_percents] out_str = "%12s: " % self.dataserver_train.class_labels[i] for j in range(len(self.dataserver_train.class_labels)): out_str += "%15s" % out_percents[j] print(out_str) ###%%% ######################################################################################## ################### Start Definition of Inner Class DetectAndLocalize ################ class DetectAndLocalize(nn.Module): """ The purpose of this inner class is to focus on object detection in images --- as opposed to image classification. Most people would say that object detection is a more challenging problem than image classification because, in general, the former also requires localization. The simplest interpretation of what is meant by localization is that the code that carries out object detection must also output a bounding-box rectangle for the object that was detected. You will find in this inner class some examples of LOADnet classes meant for solving the object detection and localization problem. The acronym "LOAD" in "LOADnet" stands for "LOcalization And Detection" The different network examples included here are LOADnet1, LOADnet2, and LOADnet3. For now, only pay attention to LOADnet2 since that's the class I have worked with the most for the 1.0.7 distribution. Class Path: DLStudio -> DetectAndLocalize """ def __init__(self, dl_studio, dataserver_train=None, dataserver_test=None, dataset_file_train=None, dataset_file_test=None): super(DLStudio.DetectAndLocalize, self).__init__() self.dl_studio = dl_studio self.dataserver_train = dataserver_train self.dataserver_test = dataserver_test self.debug = False class PurdueShapes5Dataset(torch.utils.data.Dataset): """ Class Path: DLStudio -> DetectAndLocalize -> PurdueShapes5Dataset """ def __init__(self, dl_studio, train_or_test, dataset_file): super(DLStudio.DetectAndLocalize.PurdueShapes5Dataset, self).__init__() if train_or_test == 'train' and dataset_file == "PurdueShapes5-10000-train.gz": if os.path.exists("torch-saved-PurdueShapes5-10000-dataset.pt") and \ os.path.exists("torch-saved-PurdueShapes5-label-map.pt"): print("\nLoading training data from the torch-saved archive") self.dataset = torch.load("torch-saved-PurdueShapes5-10000-dataset.pt") self.label_map = torch.load("torch-saved-PurdueShapes5-label-map.pt") # reverse the key-value pairs in the label dictionary: self.class_labels = dict(map(reversed, self.label_map.items())) else: print("""\n\n\nLooks like this is the first time you will be loading in\n""" """the dataset for this script. First time loading could take\n""" """a minute or so. Any subsequent attempts will only take\n""" """a few seconds.\n\n\n""") root_dir = dl_studio.dataroot f = gzip.open(root_dir + dataset_file, 'rb') dataset = f.read() if sys.version_info[0] == 3: self.dataset, self.label_map = pickle.loads(dataset, encoding='latin1') else: self.dataset, self.label_map = pickle.loads(dataset) torch.save(self.dataset, "torch-saved-PurdueShapes5-10000-dataset.pt") torch.save(self.label_map, "torch-saved-PurdueShapes5-label-map.pt") # reverse the key-value pairs in the label dictionary: self.class_labels = dict(map(reversed, self.label_map.items())) elif train_or_test == 'train' and dataset_file == "PurdueShapes5-10000-train-noise-20.gz": if os.path.exists("torch-saved-PurdueShapes5-10000-dataset-noise-20.pt") and \ os.path.exists("torch-saved-PurdueShapes5-label-map.pt"): print("\nLoading training data from the torch-saved archive") self.dataset = torch.load("torch-saved-PurdueShapes5-10000-dataset-noise-20.pt") self.label_map = torch.load("torch-saved-PurdueShapes5-label-map.pt") # reverse the key-value pairs in the label dictionary: self.class_labels = dict(map(reversed, self.label_map.items())) else: print("""\n\n\nLooks like this is the first time you will be loading in\n""" """the dataset for this script. First time loading could take\n""" """a minute or so. Any subsequent attempts will only take\n""" """a few seconds.\n\n\n""") root_dir = dl_studio.dataroot f = gzip.open(root_dir + dataset_file, 'rb') dataset = f.read() if sys.version_info[0] == 3: self.dataset, self.label_map = pickle.loads(dataset, encoding='latin1') else: self.dataset, self.label_map = pickle.loads(dataset) torch.save(self.dataset, "torch-saved-PurdueShapes5-10000-dataset-noise-20.pt") torch.save(self.label_map, "torch-saved-PurdueShapes5-label-map.pt") # reverse the key-value pairs in the label dictionary: self.class_labels = dict(map(reversed, self.label_map.items())) elif train_or_test == 'train' and dataset_file == "PurdueShapes5-10000-train-noise-50.gz": if os.path.exists("torch-saved-PurdueShapes5-10000-dataset-noise-50.pt") and \ os.path.exists("torch-saved-PurdueShapes5-label-map.pt"): print("\nLoading training data from the torch-saved archive") self.dataset = torch.load("torch-saved-PurdueShapes5-10000-dataset-noise-50.pt") self.label_map = torch.load("torch-saved-PurdueShapes5-label-map.pt") # reverse the key-value pairs in the label dictionary: self.class_labels = dict(map(reversed, self.label_map.items())) else: print("""\n\n\nLooks like this is the first time you will be loading in\n""" """the dataset for this script. First time loading could take\n""" """a minute or so. Any subsequent attempts will only take\n""" """a few seconds.\n\n\n""") root_dir = dl_studio.dataroot f = gzip.open(root_dir + dataset_file, 'rb') dataset = f.read() if sys.version_info[0] == 3: self.dataset, self.label_map = pickle.loads(dataset, encoding='latin1') else: self.dataset, self.label_map = pickle.loads(dataset) torch.save(self.dataset, "torch-saved-PurdueShapes5-10000-dataset-noise-50.pt") torch.save(self.label_map, "torch-saved-PurdueShapes5-label-map.pt") # reverse the key-value pairs in the label dictionary: self.class_labels = dict(map(reversed, self.label_map.items())) elif train_or_test == 'train' and dataset_file == "PurdueShapes5-10000-train-noise-80.gz": if os.path.exists("torch-saved-PurdueShapes5-10000-dataset-noise-80.pt") and \ os.path.exists("torch-saved-PurdueShapes5-label-map.pt"): print("\nLoading training data from the torch-saved archive") self.dataset = torch.load("torch-saved-PurdueShapes5-10000-dataset-noise-80.pt") self.label_map = torch.load("torch-saved-PurdueShapes5-label-map.pt") # reverse the key-value pairs in the label dictionary: self.class_labels = dict(map(reversed, self.label_map.items())) else: print("""\n\n\nLooks like this is the first time you will be loading in\n""" """the dataset for this script. First time loading could take\n""" """a minute or so. Any subsequent attempts will only take\n""" """a few seconds.\n\n\n""") root_dir = dl_studio.dataroot f = gzip.open(root_dir + dataset_file, 'rb') dataset = f.read() if sys.version_info[0] == 3: self.dataset, self.label_map = pickle.loads(dataset, encoding='latin1') else: self.dataset, self.label_map = pickle.loads(dataset) torch.save(self.dataset, "torch-saved-PurdueShapes5-10000-dataset-noise-80.pt") torch.save(self.label_map, "torch-saved-PurdueShapes5-label-map.pt") # reverse the key-value pairs in the label dictionary: self.class_labels = dict(map(reversed, self.label_map.items())) else: root_dir = dl_studio.dataroot f = gzip.open(root_dir + dataset_file, 'rb') dataset = f.read() if sys.version_info[0] == 3: self.dataset, self.label_map = pickle.loads(dataset, encoding='latin1') else: self.dataset, self.label_map = pickle.loads(dataset) # reverse the key-value pairs in the label dictionary: self.class_labels = dict(map(reversed, self.label_map.items())) def __len__(self): return len(self.dataset) def __getitem__(self, idx): r = np.array( self.dataset[idx][0] ) g = np.array( self.dataset[idx][1] ) b = np.array( self.dataset[idx][2] ) R,G,B = r.reshape(32,32), g.reshape(32,32), b.reshape(32,32) im_tensor = torch.zeros(3,32,32, dtype=torch.float) im_tensor[0,:,:] = torch.from_numpy(R) im_tensor[1,:,:] = torch.from_numpy(G) im_tensor[2,:,:] = torch.from_numpy(B) bb_tensor = torch.tensor(self.dataset[idx][3], dtype=torch.float) sample = {'image' : im_tensor, 'bbox' : bb_tensor, 'label' : self.dataset[idx][4] } return sample def load_PurdueShapes5_dataset(self, dataserver_train, dataserver_test ): self.train_dataloader = torch.utils.data.DataLoader(dataserver_train, batch_size=self.dl_studio.batch_size,shuffle=True, num_workers=4) self.test_dataloader = torch.utils.data.DataLoader(dataserver_test, batch_size=self.dl_studio.batch_size,shuffle=False, num_workers=4) class SkipBlock3(nn.Module): """ Class Path: DLStudio -> DetectAndLocalize -> SkipBlock """ def __init__(self, in_ch, out_ch, downsample=False, skip_connections=True): super(DLStudio.DetectAndLocalize.SkipBlock3, self).__init__() self.downsample = downsample self.skip_connections = skip_connections self.in_ch = in_ch self.out_ch = out_ch self.convo1 = nn.Conv2d(in_ch, in_ch, 3, stride=1, padding=1) self.convo2 = nn.Conv2d(in_ch, out_ch, 3, stride=1, padding=1) self.bn1 = nn.BatchNorm2d(in_ch) self.bn2 = nn.BatchNorm2d(out_ch) self.in2out = nn.Conv2d(in_ch, out_ch, 1) if downsample: ## Setting stride to 2 and kernel_size to 1 amounts to retaining every ## other pixel in the image --- which halves the size of the image: self.downsampler1 = nn.Conv2d(in_ch, in_ch, 1, stride=2) self.downsampler2 = nn.Conv2d(out_ch, out_ch, 1, stride=2) def forward(self, x): identity = x out = self.convo1(x) out = self.bn1(out) out = nn.functional.relu(out) out = self.convo2(out) out = self.bn2(out) out = nn.functional.relu(out) if self.downsample: identity = self.downsampler1(identity) out = self.downsampler2(out) if self.skip_connections: if (self.in_ch == self.out_ch) and (self.downsample is False): out = out + identity elif (self.in_ch != self.out_ch) and (self.downsample is False): identity = self.in2out( identity ) out = out + identity elif (self.in_ch != self.out_ch) and (self.downsample is True): out = out + torch.cat((identity, identity), dim=1) return out class LOADnet1(nn.Module): """ The acronym 'LOAD' stands for 'LOcalization And Detection'. LOADnet1 only uses fully-connected layers for the regression Class Path: DLStudio -> DetectAndLocalize -> LOADnet1 """ def __init__(self, skip_connections=True, depth=32): super(DLStudio.DetectAndLocalize.LOADnet1, self).__init__() self.pool_count = 3 self.depth = depth // 2 self.conv = nn.Conv2d(3, 64, 3, padding=1) self.skip64 = DLStudio.DetectAndLocalize.SkipBlock3(64, 64, skip_connections=skip_connections) self.skip64ds = DLStudio.DetectAndLocalize.SkipBlock3(64, 64, downsample=True, skip_connections=skip_connections) self.skip64to128 = DLStudio.DetectAndLocalize.SkipBlock3(64, 128, skip_connections=skip_connections ) self.skip128 = DLStudio.DetectAndLocalize.SkipBlock3(128, 128, skip_connections=skip_connections) self.skip128ds = DLStudio.DetectAndLocalize.SkipBlock3(128,128, downsample=True, skip_connections=skip_connections) self.fc1 = nn.Linear(128 * (32 // 2**self.pool_count)**2, 1000) self.fc2 = nn.Linear(1000, 5) self.fc3 = nn.Linear(32768, 1000) self.fc4 = nn.Linear(1000, 4) def forward(self, x): x = nn.MaxPool2d(2,2)(nn.functional.relu(self.conv(x))) ## The labeling section: for _ in range(self.depth // 4): x1 = self.skip64(x) x1 = self.skip64ds(x1) for _ in range(self.depth // 4): x1 = self.skip64(x1) x1 = self.skip64to128(x1) for _ in range(self.depth // 4): x1 = self.skip128(x1) x1 = self.skip128ds(x1) for _ in range(self.depth // 4): x1 = self.skip128(x1) x1 = x.view( x1.shape[0], - 1 ) x1 = nn.functional.relu(self.fc1(x1)) x1 = self.fc2(x1) ## The Bounding Box regression: x2 = x.view( x.shape[0], - 1 ) x2 = nn.functional.relu(self.fc3(x2)) x2 = self.fc4(x2) return x1,x2 class LOADnet2(nn.Module): """ The acronym 'LOAD' stands for 'LOcalization And Detection'. LOADnet2 uses both convo and linear layers for regression Class Path: DLStudio -> DetectAndLocalize -> LOADnet2 """ def __init__(self, skip_connections=True, depth=8): super(DLStudio.DetectAndLocalize.LOADnet2, self).__init__() if depth not in [8,10,12,14,16]: sys.exit("LOADnet2 has only been tested for 'depth' values 8, 10, 12, 14, and 16") self.depth = depth // 2 self.conv = nn.Conv2d(3, 64, 3, padding=1) self.bn1 = nn.BatchNorm2d(64) self.bn2 = nn.BatchNorm2d(128) self.skip64_arr = nn.ModuleList() for i in range(self.depth): self.skip64_arr.append(DLStudio.DetectAndLocalize.SkipBlock3(64, 64, skip_connections=skip_connections)) self.skip64ds = DLStudio.DetectAndLocalize.SkipBlock3(64, 64, downsample=True, skip_connections=skip_connections) self.skip64to128 = DLStudio.DetectAndLocalize.SkipBlock3(64, 128, skip_connections=skip_connections ) self.skip128_arr = nn.ModuleList() for i in range(self.depth): self.skip128_arr.append(DLStudio.DetectAndLocalize.SkipBlock3(128, 128, skip_connections=skip_connections)) self.skip128ds = DLStudio.DetectAndLocalize.SkipBlock3(128,128, downsample=True, skip_connections=skip_connections) self.fc1 = nn.Linear(2048, 1000) self.fc2 = nn.Linear(1000, 5) ## for regression self.conv_seqn = nn.Sequential( nn.Conv2d(in_channels=64, out_channels=64, kernel_size=3, padding=1), nn.BatchNorm2d(64), nn.ReLU(inplace=True), nn.Conv2d(in_channels=64, out_channels=64, kernel_size=3, padding=1), nn.ReLU(inplace=True) ) self.fc_seqn = nn.Sequential( nn.Linear(16384, 1024), nn.ReLU(inplace=True), nn.Linear(1024, 512), nn.ReLU(inplace=True), nn.Linear(512, 4) ## output for the 4 coords (x_min,y_min,x_max,y_max) of BBox ) def forward(self, x): x = nn.MaxPool2d(2,2)(nn.functional.relu(self.conv(x))) ## The labeling section: x1 = x.clone() for i,skip64 in enumerate(self.skip64_arr[:self.depth//4]): x1 = skip64(x1) x1 = self.skip64ds(x1) for i,skip64 in enumerate(self.skip64_arr[self.depth//4:]): x1 = skip64(x1) x1 = self.bn1(x1) x1 = self.skip64to128(x1) for i,skip128 in enumerate(self.skip128_arr[:self.depth//4]): x1 = skip128(x1) x1 = self.bn2(x1) x1 = self.skip128ds(x1) for i,skip128 in enumerate(self.skip128_arr[self.depth//4:]): x1 = skip128(x1) x1 = x1.view( x1.shape[0], - 1 ) x1 = nn.functional.relu(self.fc1(x1)) x1 = self.fc2(x1) ## The Bounding Box regression: x2 = self.conv_seqn(x) # flatten x2 = x2.view( x.shape[0], - 1 ) x2 = self.fc_seqn(x2) return x1,x2 class LOADnet3(nn.Module): """ The acronym 'LOAD' stands for 'LOcalization And Detection'. LOADnet3 uses both convo and linear layers for regression Class Path: DLStudio -> DetectAndLocalize -> LOADnet3 """ def __init__(self, skip_connections=True, depth=8): super(DLStudio.DetectAndLocalize.LOADnet3, self).__init__() if depth not in [4, 8, 16]: sys.exit("LOADnet2 has been tested for 'depth' for only 4, 8, and 16") self.depth = depth // 4 self.conv = nn.Conv2d(3, 64, 3, padding=1) self.skip64_arr = nn.ModuleList() for i in range(self.depth): self.skip64_arr.append(DLStudio.DetectAndLocalize.SkipBlock3(64, 64, skip_connections=skip_connections)) self.skip64ds = DLStudio.DetectAndLocalize.SkipBlock3(64, 64, downsample=True, skip_connections=skip_connections) self.skip64to128 = DLStudio.DetectAndLocalize.SkipBlock3(64, 128, skip_connections=skip_connections ) self.skip128_arr = nn.ModuleList() for i in range(self.depth): self.skip128_arr.append(DLStudio.DetectAndLocalize.SkipBlock3(128, 128, skip_connections=skip_connections)) self.skip128ds = DLStudio.DetectAndLocalize.SkipBlock3(128,128, downsample=True, skip_connections=skip_connections) self.fc1 = nn.Linear(2048, 1000) self.fc2 = nn.Linear(1000, 5) ## for regression self.conv_seqn = nn.Sequential( nn.Conv2d(in_channels=64, out_channels=64, kernel_size=3, padding=1), nn.ReLU(inplace=True), nn.Conv2d(in_channels=64, out_channels=64, kernel_size=3, padding=1), nn.ReLU(inplace=True) ) self.fc_seqn = nn.Sequential( nn.Linear(16384, 1024), nn.ReLU(inplace=True), nn.Linear(1024, 512), nn.ReLU(inplace=True), nn.Linear(512, 4) ) def forward(self, x): x = nn.MaxPool2d(2,2)(nn.functional.relu(self.conv(x))) ## The labeling section: x1 = x.clone() for i,skip64 in enumerate(self.skip64_arr[:self.depth//4]): x1 = skip64(x1) x1 = self.skip64ds(x1) for i,skip64 in enumerate(self.skip64_arr[self.depth//4:]): x1 = skip64(x1) x1 = self.skip64ds(x1) x1 = self.skip64to128(x1) for i,skip128 in enumerate(self.skip128_arr[:self.depth//4]): x1 = skip128(x1) for i,skip128 in enumerate(self.skip128_arr[self.depth//4:]): x1 = skip128(x1) x1 = x1.view( x1.shape[0], - 1 ) x1 = nn.functional.relu(self.fc1(x1)) x1 = self.fc2(x1) ## The Bounding Box regression: for _ in range(4): x2 = self.skip64(x) x2 = self.skip64to128(x2) for _ in range(4): x2 = self.skip128(x2) x2 = x.view( x.shape[0], - 1 ) x2 = nn.functional.relu(self.fc3(x2)) x2 = self.fc4(x2) return x1,x2 class DIoULoss(nn.Module): """ Class Path: DLStudio -> DetectAndLocalize -> DIOULoss This is a Custom Loss Function for implementing the variants of the IoU (Intersection over Union) loss as described on Slides 37 through 42 of my Week 7 presentation on Object Detection and Localization. """ def __init__(self, dl_studio, loss_mode): super(DLStudio.DetectAndLocalize.DIoULoss, self).__init__() self.dl_studio = dl_studio self.loss_mode = loss_mode def forward(self, predicted, target, loss_mode): debug = 0 ## We calculate the MSELoss between the predicted and the target BBs just for sanity check. ## It is not used in the loss that is returned by this function [However, note that the ## d2_loss defined below is the same thing as what is returned by MSELoss]: displacement_loss = nn.MSELoss()(predicted, target) ## We call the MSELoss again, but this time with "reduction='none'". The reason for that ## is that we need to calculate the MSELoss on a per-instance basis in the batch for the ## normalizations we are going to need later in our calculation of the IoU-based loss function. ## The following call returns a tensor of shape (Bx4) where B is the batch size and 4 ## is for four numeric values in a BB vector. d2_loss_per_instance = nn.MSELoss(reduction='none')(predicted, target) ## Averaging the above along Axis 1 gives us the instance based MSE Loss we want: d2_mean_loss_per_instance = torch.mean(d2_loss_per_instance, 1) ## Averaging of the above along Axis 0 should give us a single scalar that would be ## the same as the "displacement_loss" in the first line: d2_loss = torch.mean(d2_mean_loss_per_instance,0) if debug: print("\n\nMSE Loss: ", displacement_loss) print("\n\nd2_loss_per_instance_in_batch: ", d2_loss_per_instance) print("\n\nd2_mean_loss_per_instance_in_batch: ", d2_mean_loss_per_instance) print("\n\nd2 loss: ", d2_loss) ## Our next job is to figure out the BB for the convex hull of the predicted and target BBs. To ## thta end, we first find the upper-left corner of the convex hull by finding the infimum of the ## of the min (i,j) coordinates associated with the predicted and the target BBs: hull_min_i = torch.min( torch.cat( ( torch.transpose( torch.unsqueeze(predicted[:,0],0), 1,0 ), torch.transpose( torch.unsqueeze(predicted[:,2],0), 1,0 ), torch.transpose( torch.unsqueeze(target[:,0],0), 1,0 ), torch.transpose( torch.unsqueeze(target[:,2],0), 1,0 ) ), 1 ), 1 )[0].type(torch.uint8) hull_min_j = torch.min( torch.cat( ( torch.transpose( torch.unsqueeze(predicted[:,1],0), 1,0 ), torch.transpose( torch.unsqueeze(predicted[:,3],0), 1,0 ), torch.transpose( torch.unsqueeze(target[:,1],0), 1,0 ), torch.transpose( torch.unsqueeze(target[:,3],0), 1,0 ) ), 1 ), 1 )[0].type(torch.uint8) ## Next we need to find the lower-right corner of the convex hull. We do so by finding the ## supremum of the max (i,j) coordinates associated with the predicted and the target BBs: hull_max_i = torch.max( torch.cat( ( torch.transpose( torch.unsqueeze(predicted[:,0],0), 1,0 ), torch.transpose( torch.unsqueeze(predicted[:,2],0), 1,0 ), torch.transpose( torch.unsqueeze(target[:,0],0), 1,0 ), torch.transpose( torch.unsqueeze(target[:,2],0), 1,0 ) ), 1 ), 1 )[0].type(torch.uint8) hull_max_j = torch.max( torch.cat( ( torch.transpose( torch.unsqueeze(predicted[:,1],0), 1,0 ), torch.transpose( torch.unsqueeze(predicted[:,3],0), 1,0 ), torch.transpose( torch.unsqueeze(target[:,1],0), 1,0 ), torch.transpose( torch.unsqueeze(target[:,3],0), 1,0 ) ), 1 ), 1 )[0].type(torch.uint8) ## We now call on the torch.cat to organize the instance-based convex_hull min and max coordinates ## into what the convex-hull BB should look like for a batch. If B is the batch size, the shape of ## convex_hull_bb should be (B, 4): convex_hull_bb = torch.cat( ( torch.transpose( torch.unsqueeze(hull_min_i,0), 1,0), torch.transpose( torch.unsqueeze(hull_min_j,0), 1,0), torch.transpose( torch.unsqueeze(hull_max_i,0), 1,0), torch.transpose( torch.unsqueeze(hull_max_j,0), 1,0) ), 1 ).float().to(self.dl_studio.device) ## Need the square of the diagonal of the convex hull for normalization: convex_hull_diagonal_squared = torch.square(convex_hull_bb[:,0] - convex_hull_bb[:,2]) + torch.square(convex_hull_bb[:,1] - convex_hull_bb[:,3]) ## Since we will be using the BB corners for indexing, we need to convert them into ints: predicted = predicted.type(torch.uint8) target = target.type(torch.uint8) convex_hull_bb = convex_hull_bb.type(torch.uint8) ## Our next job is to convert all three BBs --- predicted, target, and convex_hull --- into binary ## for set operations of union, intersection, and the set-difference of the union from the ## convex hull. We start by initializing the three arras for each instance in the batch: img_size = self.dl_studio.image_size predicted_arr = torch.zeros(predicted.shape[0], img_size[0], img_size[1]).to(self.dl_studio.device) target_arr = torch.zeros(predicted.shape[0], img_size[0], img_size[1]).to(self.dl_studio.device) convex_hull_arr = torch.zeros(predicted.shape[0], img_size[0], img_size[1]).to(self.dl_studio.device) ## We fill the three arrays --- predicted, target, and convex_hull --- according to their respective BBs: for k in range(predicted_arr.shape[0]): predicted_arr[ k, predicted[k,0]:predicted[k,2], predicted[k,1]:predicted[k,3] ] = 1 target_arr[ k, target[k,0]:target[k,2], target[k,1]:target[k,3] ] = 1 convex_hull_arr[ k, convex_hull_bb[k,0]:convex_hull_bb[k,2], convex_hull_bb[k,1]:convex_hull_bb[k,3] ] = 1 ## We are ready for the set operations: intersection_arr = predicted_arr * target_arr intersecs = torch.sum( intersection_arr, dim=(1,2) ) union_arr = torch.logical_or( predicted_arr > 0, target_arr > 0 ).type(torch.uint8) unions = torch.sum( union_arr, dim=(1,2) ) ## find the set difference of the convex hull and the union for each batch instance: diff_arr = (convex_hull_arr != union_arr).type(torch.uint8) ## what's the total number of pixels in the the set difference: diff_sum_per_instance = torch.sum( diff_arr, dim=(1,2) ) ## also, what is the total number of pixels in the convex hull for each batch instance: convex_hull_sum_per_instance = torch.sum( convex_hull_arr, dim=(1,2) ) if (convex_hull_sum_per_instance < 10).any(): return torch.tensor([float('nan')]) ## find the ratio we need for the DIoU formula [see Eq. (8) on Slide 40 of my Week 7 slides]: epsilon = 1e-6 ratio = diff_sum_per_instance.type(torch.float) / (convex_hull_sum_per_instance.type(torch.float) + epsilon) ## find the IoU iou = intersecs / (unions + epsilon) iou_loss = torch.mean(1 - iou, 0) d2_normed = d2_mean_loss_per_instance / (convex_hull_diagonal_squared + epsilon) d2_normed_loss = torch.mean(d2_normed, 0) ratio_loss = torch.mean( ratio, 0 ) if self.loss_mode == 'd2': diou_loss = d2_loss elif self.loss_mode == 'diou1': diou_loss = iou_loss + d2_loss elif self.loss_mode == 'diou2': diou_loss = iou_loss + d2_normed_loss elif self.loss_mode == 'diou3': diou_loss = iou_loss + d2_normed_loss + ratio_loss return diou_loss def run_code_for_training_with_iou_regression(self, net, loss_mode='d2', show_images=True): """ This training routine is called by object_detection_and_localization_iou.py in the Examples directory. The possible values for loss_mode are: 'd2', 'diou1', 'diou2', 'diou3' with the following meanings: d2 : d2_loss This is just the MSE loss based on the square of the distance between the centers of the predicted BB and the ground-truth BB. diou1 : iou_loss + d2_loss We add to the pure IOU loss the value d2_loss defined above diou2 : iou_loss + d2_normed_loss We now normalize the squared distance between the centers of the predicted BB and ground_truth BB by the diagonal of the convex hull of the two BBs. diou3 : iou_loss + d2_normed_loss + ratio_loss We now normalize the IMPORTANT NOTE: You are likely to get the best results if you set the learning rate to 1e-4 for d2 and diou1 options. If the option you use is diou2 or diou3, set the learning rate to 5e-3 """ filename_for_out1 = "performance_numbers_" + str(self.dl_studio.epochs) + "label.txt" filename_for_out2 = "performance_numbers_" + str(self.dl_studio.epochs) + "regres.txt" FILE1 = open(filename_for_out1, 'w') FILE2 = open(filename_for_out2, 'w') net = copy.deepcopy(net) net = net.to(self.dl_studio.device) criterion1 = nn.CrossEntropyLoss() criterion2 = self.dl_studio.DetectAndLocalize.DIoULoss(self.dl_studio, loss_mode) optimizer = optim.SGD(net.parameters(), lr=self.dl_studio.learning_rate, momentum=self.dl_studio.momentum) print("\n\nStarting training loop...\n\n") start_time = time.perf_counter() labeling_loss_tally = [] regression_loss_tally = [] elapsed_time = 0.0 for epoch in range(self.dl_studio.epochs): print("") running_loss_labeling = 0.0 running_loss_regression = 0.0 for i, data in enumerate(self.train_dataloader): gt_too_small = False inputs, bbox_gt, labels = data['image'], data['bbox'], data['label'] inputs = inputs.to(self.dl_studio.device) labels = labels.to(self.dl_studio.device) bbox_gt = bbox_gt.to(self.dl_studio.device) optimizer.zero_grad() if self.debug: self.dl_studio.display_tensor_as_image( torchvision.utils.make_grid(inputs.cpu(), nrow=4, normalize=True, padding=2, pad_value=10)) outputs = net(inputs) outputs_label = outputs[0] bbox_pred = outputs[1] if i % 500 == 499: current_time = time.perf_counter() elapsed_time = current_time - start_time print("\n\n\n[epoch:%d/%d iter=%4d elapsed_time=%5d secs] Ground Truth: " % (epoch+1, self.dl_studio.epochs, i+1, elapsed_time) + ' '.join('%10s' % self.dataserver_train.class_labels[labels[j].item()] for j in range(self.dl_studio.batch_size))) inputs_copy = inputs.detach().clone() inputs_copy = inputs_copy.cpu() bbox_pc = bbox_pred.detach().clone() bbox_pc[bbox_pc<0] = 0 bbox_pc[bbox_pc>31] = 31 bbox_pc[torch.isnan(bbox_pc)] = 0 _, predicted = torch.max(outputs_label.data, 1) print("[epoch:%d/%d iter=%4d elapsed_time=%5d secs] Predicted Labels: " % (epoch+1, self.dl_studio.epochs, i+1, elapsed_time) + ' '.join('%10s' % self.dataserver_train.class_labels[predicted[j].item()] for j in range(self.dl_studio.batch_size))) if show_images == True: for idx in range(self.dl_studio.batch_size): i1 = int(bbox_gt[idx][1]) i2 = int(bbox_gt[idx][3]) j1 = int(bbox_gt[idx][0]) j2 = int(bbox_gt[idx][2]) k1 = int(bbox_pc[idx][1]) k2 = int(bbox_pc[idx][3]) l1 = int(bbox_pc[idx][0]) l2 = int(bbox_pc[idx][2]) print(" gt_bb: [%d,%d,%d,%d]"%(i1,j1,i2,j2)) print(" pred_bb: [%d,%d,%d,%d]"%(k1,l1,k2,l2)) inputs_copy[idx,1,i1:i2,j1] = 255 inputs_copy[idx,1,i1:i2,j2] = 255 inputs_copy[idx,1,i1,j1:j2] = 255 inputs_copy[idx,1,i2,j1:j2] = 255 inputs_copy[idx,0,k1:k2,l1] = 255 inputs_copy[idx,0,k1:k2,l2] = 255 inputs_copy[idx,0,k1,l1:l2] = 255 inputs_copy[idx,0,k2,l1:l2] = 255 loss_labeling = criterion1(outputs_label, labels) loss_labeling.backward(retain_graph=True) loss_regression = criterion2(bbox_pred, bbox_gt, loss_mode) if torch.isnan(loss_regression): continue loss_regression.backward() optimizer.step() running_loss_labeling += loss_labeling.item() running_loss_regression += loss_regression.item() if i % 500 == 499: avg_loss_labeling = running_loss_labeling / float(500) avg_loss_regression = running_loss_regression / float(500) labeling_loss_tally.append(avg_loss_labeling) regression_loss_tally.append(avg_loss_regression) print("[epoch:%d/%d iter=%4d elapsed_time=%5d secs] loss_labeling %.3f loss_regression: %.3f " % (epoch+1, self.dl_studio.epochs, i+1, elapsed_time, avg_loss_labeling, avg_loss_regression)) FILE1.write("%.3f\n" % avg_loss_labeling) FILE1.flush() FILE2.write("%.3f\n" % avg_loss_regression) FILE2.flush() running_loss_labeling = 0.0 running_loss_regression = 0.0 if show_images == True: if i%500==499: logger = logging.getLogger() old_level = logger.level logger.setLevel(100) plt.figure(figsize=[8,3]) plt.imshow(np.transpose(torchvision.utils.make_grid(inputs_copy, normalize=True, padding=3, pad_value=255).cpu(), (1,2,0))) plt.show() logger.setLevel(old_level) print("\nFinished Training\n") self.save_model(net) plt.figure(figsize=(10,5)) plt.title("Labeling Loss vs. Iterations") plt.plot(labeling_loss_tally) plt.xlabel("iterations") plt.ylabel("labeling loss") # plt.legend() plt.legend(["Plot of loss versus iterations"], fontsize="x-large") plt.savefig("labeling_loss.png") plt.show() plt.title("regression Loss vs. Iterations") plt.plot(regression_loss_tally) plt.xlabel("iterations") plt.ylabel("regression loss") # plt.legend() plt.legend(["Plot of loss versus iterations"], fontsize="x-large") plt.savefig("regression_loss.png") plt.show() def run_code_for_training_with_CrossEntropy_and_MSE_Losses(self, net, show_images=True): """ This training routine is called by object_detection_and_localization.py in the Examples directory. """ filename_for_out1 = "performance_numbers_" + str(self.dl_studio.epochs) + "label.txt" filename_for_out2 = "performance_numbers_" + str(self.dl_studio.epochs) + "regres.txt" FILE1 = open(filename_for_out1, 'w') FILE2 = open(filename_for_out2, 'w') net = copy.deepcopy(net) net = net.to(self.dl_studio.device) criterion1 = nn.CrossEntropyLoss() criterion2 = nn.MSELoss() optimizer = optim.SGD(net.parameters(), lr=self.dl_studio.learning_rate, momentum=self.dl_studio.momentum) print("\n\nStarting training loop...\n\n") start_time = time.perf_counter() labeling_loss_tally = [] regression_loss_tally = [] elapsed_time = 0.0 for epoch in range(self.dl_studio.epochs): print("") running_loss_labeling = 0.0 running_loss_regression = 0.0 for i, data in enumerate(self.train_dataloader): gt_too_small = False inputs, bbox_gt, labels = data['image'], data['bbox'], data['label'] if i % 500 == 499: current_time = time.perf_counter() elapsed_time = current_time - start_time print("\n\n\n[epoch:%d/%d iter=%4d elapsed_time=%5d secs] Ground Truth: " % (epoch+1, self.dl_studio.epochs, i+1, elapsed_time) + ' '.join('%10s' % self.dataserver_train.class_labels[labels[j].item()] for j in range(self.dl_studio.batch_size))) inputs = inputs.to(self.dl_studio.device) labels = labels.to(self.dl_studio.device) bbox_gt = bbox_gt.to(self.dl_studio.device) optimizer.zero_grad() if self.debug: self.dl_studio.display_tensor_as_image( torchvision.utils.make_grid(inputs.cpu(), nrow=4, normalize=True, padding=2, pad_value=10)) outputs = net(inputs) outputs_label = outputs[0] bbox_pred = outputs[1] if i % 500 == 499: inputs_copy = inputs.detach().clone() inputs_copy = inputs_copy.cpu() bbox_pc = bbox_pred.detach().clone() bbox_pc[bbox_pc<0] = 0 bbox_pc[bbox_pc>31] = 31 bbox_pc[torch.isnan(bbox_pc)] = 0 _, predicted = torch.max(outputs_label.data, 1) print("[epoch:%d/%d iter=%4d elapsed_time=%5d secs] Predicted Labels: " % (epoch+1, self.dl_studio.epochs, i+1, elapsed_time) + ' '.join('%10s' % self.dataserver_train.class_labels[predicted[j].item()] for j in range(self.dl_studio.batch_size))) for idx in range(self.dl_studio.batch_size): i1 = int(bbox_gt[idx][1]) i2 = int(bbox_gt[idx][3]) j1 = int(bbox_gt[idx][0]) j2 = int(bbox_gt[idx][2]) k1 = int(bbox_pc[idx][1]) k2 = int(bbox_pc[idx][3]) l1 = int(bbox_pc[idx][0]) l2 = int(bbox_pc[idx][2]) print(" gt_bb: [%d,%d,%d,%d]"%(i1,j1,i2,j2)) print(" pred_bb: [%d,%d,%d,%d]"%(k1,l1,k2,l2)) inputs_copy[idx,1,i1:i2,j1] = 255 inputs_copy[idx,1,i1:i2,j2] = 255 inputs_copy[idx,1,i1,j1:j2] = 255 inputs_copy[idx,1,i2,j1:j2] = 255 inputs_copy[idx,0,k1:k2,l1] = 255 inputs_copy[idx,0,k1:k2,l2] = 255 inputs_copy[idx,0,k1,l1:l2] = 255 inputs_copy[idx,0,k2,l1:l2] = 255 loss_labeling = criterion1(outputs_label, labels) loss_labeling.backward(retain_graph=True) loss_regression = criterion2(bbox_pred, bbox_gt) loss_regression.backward() optimizer.step() running_loss_labeling += loss_labeling.item() running_loss_regression += loss_regression.item() if i % 500 == 499: avg_loss_labeling = running_loss_labeling / float(500) avg_loss_regression = running_loss_regression / float(500) labeling_loss_tally.append(avg_loss_labeling) regression_loss_tally.append(avg_loss_regression) print("[epoch:%d/%d iter=%4d elapsed_time=%5d secs] loss_labeling %.3f loss_regression: %.3f " % (epoch+1, self.dl_studio.epochs, i+1, elapsed_time, avg_loss_labeling, avg_loss_regression)) FILE1.write("%.3f\n" % avg_loss_labeling) FILE1.flush() FILE2.write("%.3f\n" % avg_loss_regression) FILE2.flush() running_loss_labeling = 0.0 running_loss_regression = 0.0 # if i%500==499: if i%500==499 and show_images is True: logger = logging.getLogger() old_level = logger.level logger.setLevel(100) plt.figure(figsize=[8,3]) plt.imshow(np.transpose(torchvision.utils.make_grid(inputs_copy, normalize=True, padding=3, pad_value=255).cpu(), (1,2,0))) plt.show() logger.setLevel(old_level) print("\nFinished Training\n") self.save_model(net) plt.figure(figsize=(10,5)) plt.title("Labeling Loss vs. Iterations") plt.plot(labeling_loss_tally) plt.xlabel("iterations") plt.ylabel("labeling loss") # plt.legend() plt.legend(["Plot of loss versus iterations"], fontsize="x-large") plt.savefig("labeling_loss.png") plt.show() plt.title("regression Loss vs. Iterations") plt.plot(regression_loss_tally) plt.xlabel("iterations") plt.ylabel("regression loss") # plt.legend() plt.legend(["Plot of loss versus iterations"], fontsize="x-large") plt.savefig("regression_loss.png") plt.show() def save_model(self, model): ''' Save the trained model to a disk file ''' torch.save(model.state_dict(), self.dl_studio.path_saved_model) def run_code_for_testing_detection_and_localization(self, net): net.load_state_dict(torch.load(self.dl_studio.path_saved_model)) correct = 0 total = 0 confusion_matrix = torch.zeros(len(self.dataserver_train.class_labels), len(self.dataserver_train.class_labels)) class_correct = [0] * len(self.dataserver_train.class_labels) class_total = [0] * len(self.dataserver_train.class_labels) with torch.no_grad(): for i, data in enumerate(self.test_dataloader): images, bounding_box, labels = data['image'], data['bbox'], data['label'] labels = labels.tolist() if self.dl_studio.debug_test and i % 50 == 0: print("\n\n[i=%d:] Ground Truth: " %i + ' '.join('%10s' % self.dataserver_train.class_labels[labels[j]] for j in range(self.dl_studio.batch_size))) outputs = net(images) outputs_label = outputs[0] outputs_regression = outputs[1] outputs_regression[outputs_regression < 0] = 0 outputs_regression[outputs_regression > 31] = 31 outputs_regression[torch.isnan(outputs_regression)] = 0 output_bb = outputs_regression.tolist() _, predicted = torch.max(outputs_label.data, 1) predicted = predicted.tolist() if self.dl_studio.debug_test and i % 50 == 0: print("[i=%d:] Predicted Labels: " %i + ' '.join('%10s' % self.dataserver_train.class_labels[predicted[j]] for j in range(self.dl_studio.batch_size))) for idx in range(self.dl_studio.batch_size): i1 = int(bounding_box[idx][1]) i2 = int(bounding_box[idx][3]) j1 = int(bounding_box[idx][0]) j2 = int(bounding_box[idx][2]) k1 = int(output_bb[idx][1]) k2 = int(output_bb[idx][3]) l1 = int(output_bb[idx][0]) l2 = int(output_bb[idx][2]) print(" gt_bb: [%d,%d,%d,%d]"%(j1,i1,j2,i2)) print(" pred_bb: [%d,%d,%d,%d]"%(l1,k1,l2,k2)) images[idx,0,i1:i2,j1] = 255 images[idx,0,i1:i2,j2] = 255 images[idx,0,i1,j1:j2] = 255 images[idx,0,i2,j1:j2] = 255 images[idx,2,k1:k2,l1] = 255 images[idx,2,k1:k2,l2] = 255 images[idx,2,k1,l1:l2] = 255 images[idx,2,k2,l1:l2] = 255 logger = logging.getLogger() old_level = logger.level logger.setLevel(100) plt.figure(figsize=[8,3]) plt.imshow(np.transpose(torchvision.utils.make_grid(images, normalize=True, padding=3, pad_value=255).cpu(), (1,2,0))) plt.show() logger.setLevel(old_level) for label,prediction in zip(labels,predicted): confusion_matrix[label][prediction] += 1 total += len(labels) correct += [predicted[ele] == labels[ele] for ele in range(len(predicted))].count(True) comp = [predicted[ele] == labels[ele] for ele in range(len(predicted))] for j in range(self.dl_studio.batch_size): label = labels[j] class_correct[label] += comp[j] class_total[label] += 1 print("\n") for j in range(len(self.dataserver_train.class_labels)): print('Prediction accuracy for %5s : %2d %%' % ( self.dataserver_train.class_labels[j], 100 * class_correct[j] / class_total[j])) print("\n\n\nOverall accuracy of the network on the 1000 test images: %d %%" % (100 * correct / float(total))) print("\n\nDisplaying the confusion matrix:\n") out_str = " " for j in range(len(self.dataserver_train.class_labels)): out_str += "%15s" % self.dataserver_train.class_labels[j] print(out_str + "\n") for i,label in enumerate(self.dataserver_train.class_labels): out_percents = [100 * confusion_matrix[i,j] / float(class_total[i]) for j in range(len(self.dataserver_train.class_labels))] out_percents = ["%.2f" % item.item() for item in out_percents] out_str = "%12s: " % self.dataserver_train.class_labels[i] for j in range(len(self.dataserver_train.class_labels)): out_str += "%15s" % out_percents[j] print(out_str) ###%%% ######################################################################################## ################## Start Definition of Inner Class SemanticSegmentation ############## class SemanticSegmentation(nn.Module): """ The purpose of this inner class is to be able to use the DLStudio module for experiments with semantic segmentation. At its simplest level, the purpose of semantic segmentation is to assign correct labels to the different objects in a scene, while localizing them at the same time. At a more sophisticated level, a system that carries out semantic segmentation should also output a symbolic expression based on the objects found in the image and their spatial relationships with one another. The workhorse of this inner class is the mUNet network that is based on the UNET network that was first proposed by Ronneberger, Fischer and Brox in the paper "U-Net: Convolutional Networks for Biomedical Image Segmentation". Their Unet extracts binary masks for the cell pixel blobs of interest in biomedical images. The output of their Unet can therefore be treated as a pixel-wise binary classifier at each pixel position. The mUnet class, on the other hand, is intended for segmenting out multiple objects simultaneously form an image. [A weaker reason for "Multi" in the name of the class is that it uses skip connections not only across the two arms of the "U", but also also along the arms. The skip connections in the original Unet are only between the two arms of the U. In mUnet, each object type is assigned a separate channel in the output of the network. This version of DLStudio also comes with a new dataset, PurdueShapes5MultiObject, for experimenting with mUnet. Each image in this dataset contains a random number of selections from five different shapes, with the shapes being randomly scaled, oriented, and located in each image. The five different shapes are: rectangle, triangle, disk, oval, and star. Class Path: DLStudio -> SemanticSegmentation """ def __init__(self, dl_studio, max_num_objects, dataserver_train=None, dataserver_test=None, dataset_file_train=None, dataset_file_test=None): super(DLStudio.SemanticSegmentation, self).__init__() self.dl_studio = dl_studio self.max_num_objects = max_num_objects self.dataserver_train = dataserver_train self.dataserver_test = dataserver_test class PurdueShapes5MultiObjectDataset(torch.utils.data.Dataset): """ The very first thing to note is that the images in the dataset PurdueShapes5MultiObjectDataset are of size 64x64. Each image has a random number (up to five) of the objects drawn from the following five shapes: rectangle, triangle, disk, oval, and star. Each shape is randomized with respect to all its parameters, including those for its scale and location in the image. Each image in the dataset is represented by two data objects, one a list and the other a dictionary. The list data objects consists of the following items: [R, G, B, mask_array, mask_val_to_bbox_map] ## (A) and the other data object is a dictionary that is set to: label_map = {'rectangle':50, 'triangle' :100, 'disk' :150, 'oval' :200, 'star' :250} ## (B) Note that that second data object for each image is the same, as shown above. In the rest of this comment block, I'll explain in greater detail the elements of the list in line (A) above. R,G,B: ------ Each of these is a 4096-element array whose elements store the corresponding color values at each of the 4096 pixels in a 64x64 image. That is, R is a list of 4096 integers, each between 0 and 255, for the value of the red component of the color at each pixel. Similarly, for G and B. mask_array: ---------- The fourth item in the list shown in line (A) above is for the mask which is a numpy array of shape: (5, 64, 64) It is initialized by the command: mask_array = np.zeros((5,64,64), dtype=np.uint8) In essence, the mask_array consists of five planes, each of size 64x64. Each plane of the mask array represents an object type according to the following shape_index shape_index = (label_map[shape] - 50) // 50 where the label_map is as shown in line (B) above. In other words, the shape_index values for the different shapes are: rectangle: 0 triangle: 1 disk: 2 oval: 3 star: 4 Therefore, the first layer (of index 0) of the mask is where the pixel values of 50 are stored at all those pixels that belong to the rectangle shapes. Similarly, the second mask layer (of index 1) is where the pixel values of 100 are stored at all those pixel coordinates that belong to the triangle shapes in an image; and so on. It is in the manner described above that we define five different masks for an image in the dataset. Each mask is for a different shape and the pixel values at the nonzero pixels in each mask layer are keyed to the shapes also. A reader is likely to wonder as to the need for this redundancy in the dataset representation of the shapes in each image. Such a reader is likely to ask: Why can't we just use the binary values 1s and 0s in each mask layer where the corresponding pixels are in the image? Setting these mask values to 50, 100, etc., was done merely for convenience. I went with the intuition that the learning needed for multi-object segmentation would become easier if each shape was represented by a different pixels value in the corresponding mask. So I went ahead incorporated that in the dataset generation program itself. The mask values for the shapes are not to be confused with the actual RGB values of the pixels that belong to the shapes. The RGB values at the pixels in a shape are randomly generated. Yes, all the pixels in a shape instance in an image have the same RGB values (but that value has nothing to do with the values given to the mask pixels for that shape). mask_val_to_bbox_map: -------------------- The fifth item in the list in line (A) above is a dictionary that tells us what bounding-box rectangle to associate with each shape in the image. To illustrate what this dictionary looks like, assume that an image contains only one rectangle and only one disk, the dictionary in this case will look like: mask values to bbox mappings: {200: [], 250: [], 100: [], 50: [[56, 20, 63, 25]], 150: [[37, 41, 55, 59]]} Should there happen to be two rectangles in the same image, the dictionary would then be like: mask values to bbox mappings: {200: [], 250: [], 100: [], 50: [[56, 20, 63, 25], [18, 16, 32, 36]], 150: [[37, 41, 55, 59]]} Therefore, it is not a problem even if all the objects in an image are of the same type. Remember, the object that are selected for an image are shown randomly from the different shapes. By the way, an entry like '[56, 20, 63, 25]' for the bounding box means that the upper-left corner of the BBox for the 'rectangle' shape is at (56,20) and the lower-right corner of the same is at the pixel coordinates (63,25). As far as the BBox quadruples are concerned, in the definition [min_x,min_y,max_x,max_y] note that x is the horizontal coordinate, increasing to the right on your screen, and y is the vertical coordinate increasing downwards. Class Path: DLStudio -> SemanticSegmentation -> PurdueShapes5MultiObjectDataset """ def __init__(self, dl_studio, segmenter, train_or_test, dataset_file): super(DLStudio.SemanticSegmentation.PurdueShapes5MultiObjectDataset, self).__init__() max_num_objects = segmenter.max_num_objects if train_or_test == 'train' and dataset_file == "PurdueShapes5MultiObject-10000-train.gz": if os.path.exists("torch_saved_PurdueShapes5MultiObject-10000_dataset.pt") and \ os.path.exists("torch_saved_PurdueShapes5MultiObject_label_map.pt"): print("\nLoading training data from torch saved file") self.dataset = torch.load("torch_saved_PurdueShapes5MultiObject-10000_dataset.pt") self.label_map = torch.load("torch_saved_PurdueShapes5MultiObject_label_map.pt") self.num_shapes = len(self.label_map) self.image_size = dl_studio.image_size else: print("""\n\n\nLooks like this is the first time you will be loading in\n""" """the dataset for this script. First time loading could take\n""" """a few minutes. Any subsequent attempts will only take\n""" """a few seconds.\n\n\n""") root_dir = dl_studio.dataroot f = gzip.open(root_dir + dataset_file, 'rb') dataset = f.read() self.dataset, self.label_map = pickle.loads(dataset, encoding='latin1') torch.save(self.dataset, "torch_saved_PurdueShapes5MultiObject-10000_dataset.pt") torch.save(self.label_map, "torch_saved_PurdueShapes5MultiObject_label_map.pt") # reverse the key-value pairs in the label dictionary: self.class_labels = dict(map(reversed, self.label_map.items())) self.num_shapes = len(self.class_labels) self.image_size = dl_studio.image_size else: root_dir = dl_studio.dataroot f = gzip.open(root_dir + dataset_file, 'rb') dataset = f.read() if sys.version_info[0] == 3: self.dataset, self.label_map = pickle.loads(dataset, encoding='latin1') else: self.dataset, self.label_map = pickle.loads(dataset) # reverse the key-value pairs in the label dictionary: self.class_labels = dict(map(reversed, self.label_map.items())) self.num_shapes = len(self.class_labels) self.image_size = dl_studio.image_size def __len__(self): return len(self.dataset) def __getitem__(self, idx): image_size = self.image_size r = np.array( self.dataset[idx][0] ) g = np.array( self.dataset[idx][1] ) b = np.array( self.dataset[idx][2] ) R,G,B = r.reshape(image_size[0],image_size[1]), g.reshape(image_size[0],image_size[1]), b.reshape(image_size[0],image_size[1]) im_tensor = torch.zeros(3,image_size[0],image_size[1], dtype=torch.float) im_tensor[0,:,:] = torch.from_numpy(R) im_tensor[1,:,:] = torch.from_numpy(G) im_tensor[2,:,:] = torch.from_numpy(B) mask_array = np.array(self.dataset[idx][3]) max_num_objects = len( mask_array[0] ) mask_tensor = torch.from_numpy(mask_array) mask_val_to_bbox_map = self.dataset[idx][4] max_bboxes_per_entry_in_map = max([ len(mask_val_to_bbox_map[key]) for key in mask_val_to_bbox_map ]) ## The first arg 5 is for the number of bboxes we are going to need. If all the ## shapes are exactly the same, you are going to need five different bbox'es. ## The second arg is the index reserved for each shape in a single bbox bbox_tensor = torch.zeros(max_num_objects,self.num_shapes,4, dtype=torch.float) for bbox_idx in range(max_bboxes_per_entry_in_map): for key in mask_val_to_bbox_map: if len(mask_val_to_bbox_map[key]) == 1: if bbox_idx == 0: bbox_tensor[bbox_idx,key,:] = torch.from_numpy(np.array(mask_val_to_bbox_map[key][bbox_idx])) elif len(mask_val_to_bbox_map[key]) > 1 and bbox_idx < len(mask_val_to_bbox_map[key]): bbox_tensor[bbox_idx,key,:] = torch.from_numpy(np.array(mask_val_to_bbox_map[key][bbox_idx])) sample = {'image' : im_tensor, 'mask_tensor' : mask_tensor, 'bbox_tensor' : bbox_tensor } return sample def load_PurdueShapes5MultiObject_dataset(self, dataserver_train, dataserver_test ): self.train_dataloader = torch.utils.data.DataLoader(dataserver_train, batch_size=self.dl_studio.batch_size,shuffle=True, num_workers=4) self.test_dataloader = torch.utils.data.DataLoader(dataserver_test, batch_size=self.dl_studio.batch_size,shuffle=False, num_workers=4) class SkipBlockDN(nn.Module): """ This class for the skip connections in the downward leg of the "U" Class Path: DLStudio -> SemanticSegmentation -> SkipBlockDN """ def __init__(self, in_ch, out_ch, downsample=False, skip_connections=True): super(DLStudio.SemanticSegmentation.SkipBlockDN, self).__init__() self.downsample = downsample self.skip_connections = skip_connections self.in_ch = in_ch self.out_ch = out_ch self.convo1 = nn.Conv2d(in_ch, out_ch, 3, stride=1, padding=1) self.convo2 = nn.Conv2d(in_ch, out_ch, 3, stride=1, padding=1) self.bn1 = nn.BatchNorm2d(out_ch) self.bn2 = nn.BatchNorm2d(out_ch) if downsample: self.downsampler = nn.Conv2d(in_ch, out_ch, 1, stride=2) def forward(self, x): identity = x out = self.convo1(x) out = self.bn1(out) out = nn.functional.relu(out) if self.in_ch == self.out_ch: out = self.convo2(out) out = self.bn2(out) out = nn.functional.relu(out) if self.downsample: out = self.downsampler(out) identity = self.downsampler(identity) if self.skip_connections: if self.in_ch == self.out_ch: out = out + identity else: out = out + torch.cat((identity, identity), dim=1) return out class SkipBlockUP(nn.Module): """ This class is for the skip connections in the upward leg of the "U" Class Path: DLStudio -> SemanticSegmentation -> SkipBlockUP """ def __init__(self, in_ch, out_ch, upsample=False, skip_connections=True): super(DLStudio.SemanticSegmentation.SkipBlockUP, self).__init__() self.upsample = upsample self.skip_connections = skip_connections self.in_ch = in_ch self.out_ch = out_ch self.convoT1 = nn.ConvTranspose2d(in_ch, out_ch, 3, padding=1) self.convoT2 = nn.ConvTranspose2d(in_ch, out_ch, 3, padding=1) self.bn1 = nn.BatchNorm2d(out_ch) self.bn2 = nn.BatchNorm2d(out_ch) if upsample: self.upsampler = nn.ConvTranspose2d(in_ch, out_ch, 1, stride=2, dilation=2, output_padding=1, padding=0) def forward(self, x): identity = x out = self.convoT1(x) out = self.bn1(out) out = nn.functional.relu(out) out = nn.ReLU(inplace=False)(out) if self.in_ch == self.out_ch: out = self.convoT2(out) out = self.bn2(out) out = nn.functional.relu(out) if self.upsample: out = self.upsampler(out) identity = self.upsampler(identity) if self.skip_connections: if self.in_ch == self.out_ch: out = out + identity else: out = out + identity[:,self.out_ch:,:,:] return out class mUNet(nn.Module): """ This network is called mUNet because it is intended for segmenting out multiple objects simultaneously form an image. [A weaker reason for "Multi" in the name of the class is that it uses skip connections not only across the two arms of the "U", but also also along the arms.] The classic UNET was first proposed by Ronneberger, Fischer and Brox in the paper "U-Net: Convolutional Networks for Biomedical Image Segmentation". Their UNET extracts binary masks for the cell pixel blobs of interest in biomedical images. The output of their UNET therefore can therefore be treated as a pixel-wise binary classifier at each pixel position. The mUNet presented here, on the other hand, is meant specifically for simultaneously identifying and localizing multiple objects in a given image. Each object type is assigned a separate channel in the output of the network. I have created a dataset, PurdueShapes5MultiObject, for experimenting with mUNet. Each image in this dataset contains a random number of selections from five different shapes, with the shapes being randomly scaled, oriented, and located in each image. The five different shapes are: rectangle, triangle, disk, oval, and star. Class Path: DLStudio -> SemanticSegmentation -> mUNet """ def __init__(self, skip_connections=True, depth=16): super(DLStudio.SemanticSegmentation.mUNet, self).__init__() self.depth = depth // 2 self.conv_in = nn.Conv2d(3, 64, 3, padding=1) ## For the DN arm of the U: self.bn1DN = nn.BatchNorm2d(64) self.bn2DN = nn.BatchNorm2d(128) self.skip64DN_arr = nn.ModuleList() for i in range(self.depth): self.skip64DN_arr.append(DLStudio.SemanticSegmentation.SkipBlockDN(64, 64, skip_connections=skip_connections)) self.skip64dsDN = DLStudio.SemanticSegmentation.SkipBlockDN(64, 64, downsample=True, skip_connections=skip_connections) self.skip64to128DN = DLStudio.SemanticSegmentation.SkipBlockDN(64, 128, skip_connections=skip_connections ) self.skip128DN_arr = nn.ModuleList() for i in range(self.depth): self.skip128DN_arr.append(DLStudio.SemanticSegmentation.SkipBlockDN(128, 128, skip_connections=skip_connections)) self.skip128dsDN = DLStudio.SemanticSegmentation.SkipBlockDN(128,128, downsample=True, skip_connections=skip_connections) ## For the UP arm of the U: self.bn1UP = nn.BatchNorm2d(128) self.bn2UP = nn.BatchNorm2d(64) self.skip64UP_arr = nn.ModuleList() for i in range(self.depth): self.skip64UP_arr.append(DLStudio.SemanticSegmentation.SkipBlockUP(64, 64, skip_connections=skip_connections)) self.skip64usUP = DLStudio.SemanticSegmentation.SkipBlockUP(64, 64, upsample=True, skip_connections=skip_connections) self.skip128to64UP = DLStudio.SemanticSegmentation.SkipBlockUP(128, 64, skip_connections=skip_connections ) self.skip128UP_arr = nn.ModuleList() for i in range(self.depth): self.skip128UP_arr.append(DLStudio.SemanticSegmentation.SkipBlockUP(128, 128, skip_connections=skip_connections)) self.skip128usUP = DLStudio.SemanticSegmentation.SkipBlockUP(128,128, upsample=True, skip_connections=skip_connections) self.conv_out = nn.ConvTranspose2d(64, 5, 3, stride=2,dilation=2,output_padding=1,padding=2) def forward(self, x): ## Going down to the bottom of the U: x = nn.MaxPool2d(2,2)(nn.functional.relu(self.conv_in(x))) for i,skip64 in enumerate(self.skip64DN_arr[:self.depth//4]): x = skip64(x) num_channels_to_save1 = x.shape[1] // 2 save_for_upside_1 = x[:,:num_channels_to_save1,:,:].clone() x = self.skip64dsDN(x) for i,skip64 in enumerate(self.skip64DN_arr[self.depth//4:]): x = skip64(x) x = self.bn1DN(x) num_channels_to_save2 = x.shape[1] // 2 save_for_upside_2 = x[:,:num_channels_to_save2,:,:].clone() x = self.skip64to128DN(x) for i,skip128 in enumerate(self.skip128DN_arr[:self.depth//4]): x = skip128(x) x = self.bn2DN(x) num_channels_to_save3 = x.shape[1] // 2 save_for_upside_3 = x[:,:num_channels_to_save3,:,:].clone() for i,skip128 in enumerate(self.skip128DN_arr[self.depth//4:]): x = skip128(x) x = self.skip128dsDN(x) ## Coming up from the bottom of U on the other side: x = self.skip128usUP(x) for i,skip128 in enumerate(self.skip128UP_arr[:self.depth//4]): x = skip128(x) x[:,:num_channels_to_save3,:,:] = save_for_upside_3 x = self.bn1UP(x) for i,skip128 in enumerate(self.skip128UP_arr[:self.depth//4]): x = skip128(x) x = self.skip128to64UP(x) for i,skip64 in enumerate(self.skip64UP_arr[self.depth//4:]): x = skip64(x) x[:,:num_channels_to_save2,:,:] = save_for_upside_2 x = self.bn2UP(x) x = self.skip64usUP(x) for i,skip64 in enumerate(self.skip64UP_arr[:self.depth//4]): x = skip64(x) x[:,:num_channels_to_save1,:,:] = save_for_upside_1 x = self.conv_out(x) return x class SegmentationLoss(nn.Module): """ I wrote this class before I switched to MSE loss. I am leaving it here in case I need to get back to it in the future. Class Path: DLStudio -> SemanticSegmentation -> SegmentationLoss """ def __init__(self, batch_size): super(DLStudio.SemanticSegmentation.SegmentationLoss, self).__init__() self.batch_size = batch_size def forward(self, output, mask_tensor): composite_loss = torch.zeros(1,self.batch_size) mask_based_loss = torch.zeros(1,5) for idx in range(self.batch_size): outputh = output[idx,0,:,:] for mask_layer_idx in range(mask_tensor.shape[0]): mask = mask_tensor[idx,mask_layer_idx,:,:] element_wise = (outputh - mask)**2 mask_based_loss[0,mask_layer_idx] = torch.mean(element_wise) composite_loss[0,idx] = torch.sum(mask_based_loss) return torch.sum(composite_loss) / self.batch_size def run_code_for_training_for_semantic_segmentation(self, net): filename_for_out1 = "performance_numbers_" + str(self.dl_studio.epochs) + ".txt" FILE1 = open(filename_for_out1, 'w') net = copy.deepcopy(net) net = net.to(self.dl_studio.device) criterion1 = nn.MSELoss() optimizer = optim.SGD(net.parameters(), lr=self.dl_studio.learning_rate, momentum=self.dl_studio.momentum) start_time = time.perf_counter() for epoch in range(self.dl_studio.epochs): print("") running_loss_segmentation = 0.0 for i, data in enumerate(self.train_dataloader): im_tensor,mask_tensor,bbox_tensor =data['image'],data['mask_tensor'],data['bbox_tensor'] im_tensor = im_tensor.to(self.dl_studio.device) mask_tensor = mask_tensor.type(torch.FloatTensor) mask_tensor = mask_tensor.to(self.dl_studio.device) bbox_tensor = bbox_tensor.to(self.dl_studio.device) optimizer.zero_grad() output = net(im_tensor) segmentation_loss = criterion1(output, mask_tensor) segmentation_loss.backward() optimizer.step() running_loss_segmentation += segmentation_loss.item() if i%500==499: current_time = time.perf_counter() elapsed_time = current_time - start_time avg_loss_segmentation = running_loss_segmentation / float(500) print("[epoch=%d/%d, iter=%4d elapsed_time=%3d secs] MSE loss: %.3f" % (epoch+1, self.dl_studio.epochs, i+1, elapsed_time, avg_loss_segmentation)) FILE1.write("%.3f\n" % avg_loss_segmentation) FILE1.flush() running_loss_segmentation = 0.0 print("\nFinished Training\n") self.save_model(net) def save_model(self, model): ''' Save the trained model to a disk file ''' torch.save(model.state_dict(), self.dl_studio.path_saved_model) def run_code_for_testing_semantic_segmentation(self, net): net.load_state_dict(torch.load(self.dl_studio.path_saved_model)) batch_size = self.dl_studio.batch_size image_size = self.dl_studio.image_size max_num_objects = self.max_num_objects with torch.no_grad(): for i, data in enumerate(self.test_dataloader): im_tensor,mask_tensor,bbox_tensor =data['image'],data['mask_tensor'],data['bbox_tensor'] if i % 50 == 0: print("\n\n\n\nShowing output for test batch %d: " % (i+1)) outputs = net(im_tensor) ## In the statement below: 1st arg for batch items, 2nd for channels, 3rd and 4th for image size output_bw_tensor = torch.zeros(batch_size,1,image_size[0],image_size[1], dtype=float) for image_idx in range(batch_size): for layer_idx in range(max_num_objects): for m in range(image_size[0]): for n in range(image_size[1]): output_bw_tensor[image_idx,0,m,n] = torch.max( outputs[image_idx,:,m,n] ) display_tensor = torch.zeros(7 * batch_size,3,image_size[0],image_size[1], dtype=float) for idx in range(batch_size): for bbox_idx in range(max_num_objects): bb_tensor = bbox_tensor[idx,bbox_idx] for k in range(max_num_objects): i1 = int(bb_tensor[k][1]) i2 = int(bb_tensor[k][3]) j1 = int(bb_tensor[k][0]) j2 = int(bb_tensor[k][2]) output_bw_tensor[idx,0,i1:i2,j1] = 255 output_bw_tensor[idx,0,i1:i2,j2] = 255 output_bw_tensor[idx,0,i1,j1:j2] = 255 output_bw_tensor[idx,0,i2,j1:j2] = 255 im_tensor[idx,0,i1:i2,j1] = 255 im_tensor[idx,0,i1:i2,j2] = 255 im_tensor[idx,0,i1,j1:j2] = 255 im_tensor[idx,0,i2,j1:j2] = 255 display_tensor[:batch_size,:,:,:] = output_bw_tensor display_tensor[batch_size:2*batch_size,:,:,:] = im_tensor for batch_im_idx in range(batch_size): for mask_layer_idx in range(max_num_objects): for i in range(image_size[0]): for j in range(image_size[1]): if mask_layer_idx == 0: if 25 < outputs[batch_im_idx,mask_layer_idx,i,j] < 85: outputs[batch_im_idx,mask_layer_idx,i,j] = 255 else: outputs[batch_im_idx,mask_layer_idx,i,j] = 50 elif mask_layer_idx == 1: if 65 < outputs[batch_im_idx,mask_layer_idx,i,j] < 135: outputs[batch_im_idx,mask_layer_idx,i,j] = 255 else: outputs[batch_im_idx,mask_layer_idx,i,j] = 50 elif mask_layer_idx == 2: if 115 < outputs[batch_im_idx,mask_layer_idx,i,j] < 185: outputs[batch_im_idx,mask_layer_idx,i,j] = 255 else: outputs[batch_im_idx,mask_layer_idx,i,j] = 50 elif mask_layer_idx == 3: if 165 < outputs[batch_im_idx,mask_layer_idx,i,j] < 230: outputs[batch_im_idx,mask_layer_idx,i,j] = 255 else: outputs[batch_im_idx,mask_layer_idx,i,j] = 50 elif mask_layer_idx == 4: if outputs[batch_im_idx,mask_layer_idx,i,j] > 210: outputs[batch_im_idx,mask_layer_idx,i,j] = 255 else: outputs[batch_im_idx,mask_layer_idx,i,j] = 50 display_tensor[2*batch_size+batch_size*mask_layer_idx+batch_im_idx,:,:,:]= outputs[batch_im_idx,mask_layer_idx,:,:] self.dl_studio.display_tensor_as_image( torchvision.utils.make_grid(display_tensor, nrow=batch_size, normalize=True, padding=2, pad_value=10)) ###%%% ######################################################################################## ################## Start Definition of Inner Class TextClassification ################ class TextClassification(nn.Module): """ The purpose of this inner class is to be able to use the DLStudio module for simple experiments in text classification. Consider, for example, the problem of automatic classification of variable-length user feedback: you want to create a neural network that can label an uploaded product review of arbitrary length as positive or negative. One way to solve this problem is with a recurrent neural network in which you use a hidden state for characterizing a variable-length product review with a fixed-length state vector. This inner class allows you to carry out such experiments. Class Path: DLStudio -> TextClassification """ def __init__(self, dl_studio, dataserver_train=None, dataserver_test=None, dataset_file_train=None, dataset_file_test=None, display_train_loss=False): super(DLStudio.TextClassification, self).__init__() self.dl_studio = dl_studio self.dataserver_train = dataserver_train self.dataserver_test = dataserver_test self.display_train_loss = display_train_loss class SentimentAnalysisDataset(torch.utils.data.Dataset): """ The sentiment analysis datasets that I have made available were extracted from an archive of user feedback comments as made available by Amazon for the year 2007. The original archive contains user feedback on 25 product categories. For each product category, there are two files named 'positive.reviews' and 'negative.reviews', with each file containing 1000 reviews. I believe that characterizing the reviews as 'positive' or 'negative' was carried out by human annotators. Regardless, the reviews in these two files can be used to train a neural network whose purpose would be to automatically characterize a product as being positive or negative. I have extracted the following datasets extracted from the Amazon archive: sentiment_dataset_train_200.tar.gz vocab_size = 43,285 sentiment_dataset_test_200.tar.gz sentiment_dataset_train_40.tar.gz vocab_size = 17,001 sentiment_dataset_test_40.tar.gz sentiment_dataset_train_3.tar.gz vocab_size = 3,402 sentiment_dataset_test_3.tar.gz The integer in the name of each dataset is the number of reviews collected from the 'positive.reviews' and the 'negative.reviews' files for each product category. Therefore, the dataset with 200 in its name has a total of 400 reviews for each product category. As to why I am presenting these three different datasets, note that, as shown above, the size of the vocabulary depends on the number of reviews selected and the size of the vocabulary has a strong bearing on how long it takes to train an algorithm for text classification. For one simple reason for that: the size of the one-hot representation for the words equals the size of the vocabulary. Therefore, the one-hot representation for the words for the dataset with 200 in its name will be a one-axis tensor of size 43,285. For a purely feedforward network, it is not a big deal for the input tensors to be size Nx43285 where N is the number of words in a review. And even for RNNs with simple feedback, that does not slow things down. However, when using GRUs, it's an entirely different matter if you are tying to run your experiments on, say, a laptop with a Quadro GPU. Hence the reason for providing the datasets with 200 and 40 reviews. The dataset with just 3 reviews is for debugging your code. Class Path: DLStudio -> TextClassification -> SentimentAnalysisDataset """ def __init__(self, dl_studio, train_or_test, dataset_file): super(DLStudio.TextClassification.SentimentAnalysisDataset, self).__init__() self.train_or_test = train_or_test root_dir = dl_studio.dataroot f = gzip.open(root_dir + dataset_file, 'rb') dataset = f.read() if train_or_test == 'train': if sys.version_info[0] == 3: self.positive_reviews_train, self.negative_reviews_train, self.vocab = pickle.loads(dataset, encoding='latin1') else: self.positive_reviews_train, self.negative_reviews_train, self.vocab = pickle.loads(dataset) self.categories = sorted(list(self.positive_reviews_train.keys())) self.category_sizes_train_pos = {category : len(self.positive_reviews_train[category]) for category in self.categories} self.category_sizes_train_neg = {category : len(self.negative_reviews_train[category]) for category in self.categories} self.indexed_dataset_train = [] for category in self.positive_reviews_train: for review in self.positive_reviews_train[category]: self.indexed_dataset_train.append([review, category, 1]) for category in self.negative_reviews_train: for review in self.negative_reviews_train[category]: self.indexed_dataset_train.append([review, category, 0]) random.shuffle(self.indexed_dataset_train) elif train_or_test == 'test': if sys.version_info[0] == 3: self.positive_reviews_test, self.negative_reviews_test, self.vocab = pickle.loads(dataset, encoding='latin1') else: self.positive_reviews_test, self.negative_reviews_test, self.vocab = pickle.loads(dataset) self.vocab = sorted(self.vocab) self.categories = sorted(list(self.positive_reviews_test.keys())) self.category_sizes_test_pos = {category : len(self.positive_reviews_test[category]) for category in self.categories} self.category_sizes_test_neg = {category : len(self.negative_reviews_test[category]) for category in self.categories} self.indexed_dataset_test = [] for category in self.positive_reviews_test: for review in self.positive_reviews_test[category]: self.indexed_dataset_test.append([review, category, 1]) for category in self.negative_reviews_test: for review in self.negative_reviews_test[category]: self.indexed_dataset_test.append([review, category, 0]) random.shuffle(self.indexed_dataset_test) def get_vocab_size(self): return len(self.vocab) def one_hotvec_for_word(self, word): word_index = self.vocab.index(word) hotvec = torch.zeros(1, len(self.vocab)) hotvec[0, word_index] = 1 return hotvec def review_to_tensor(self, review): review_tensor = torch.zeros(len(review), len(self.vocab)) for i,word in enumerate(review): review_tensor[i,:] = self.one_hotvec_for_word(word) return review_tensor def sentiment_to_tensor(self, sentiment): """ Sentiment is ordinarily just a binary valued thing. It is 0 for negative sentiment and 1 for positive sentiment. We need to pack this value in a two-element tensor. """ sentiment_tensor = torch.zeros(2) if sentiment == 1: sentiment_tensor[1] = 1 elif sentiment == 0: sentiment_tensor[0] = 1 sentiment_tensor = sentiment_tensor.type(torch.long) return sentiment_tensor def __len__(self): if self.train_or_test == 'train': return len(self.indexed_dataset_train) elif self.train_or_test == 'test': return len(self.indexed_dataset_test) def __getitem__(self, idx): sample = self.indexed_dataset_train[idx] if self.train_or_test == 'train' else self.indexed_dataset_test[idx] review = sample[0] review_category = sample[1] review_sentiment = sample[2] review_sentiment = self.sentiment_to_tensor(review_sentiment) review_tensor = self.review_to_tensor(review) category_index = self.categories.index(review_category) sample = {'review' : review_tensor, 'category' : category_index, # should be converted to tensor, but not yet used 'sentiment' : review_sentiment } return sample def load_SentimentAnalysisDataset(self, dataserver_train, dataserver_test ): self.train_dataloader = torch.utils.data.DataLoader(dataserver_train, batch_size=self.dl_studio.batch_size,shuffle=True, num_workers=1) self.test_dataloader = torch.utils.data.DataLoader(dataserver_test, batch_size=self.dl_studio.batch_size,shuffle=False, num_workers=1) class TEXTnet(nn.Module): """ This network is meant for semantic classification of variable-length sentiment data. Based on my limited testing, the performance of this network is very poor because it has no protection against vanishing gradients when used in an RNN. Class Path: DLStudio -> TextClassification -> TEXTnet """ def __init__(self, input_size, hidden_size, output_size): super(DLStudio.TextClassification.TEXTnet, self).__init__() self.input_size = input_size self.hidden_size = hidden_size self.output_size = output_size self.combined_to_hidden = nn.Linear(input_size + hidden_size, hidden_size) self.combined_to_middle = nn.Linear(input_size + hidden_size, 100) self.middle_to_out = nn.Linear(100, output_size) self.logsoftmax = nn.LogSoftmax(dim=1) self.dropout = nn.Dropout(p=0.1) def forward(self, input, hidden): combined = torch.cat((input, hidden), 1) hidden = self.combined_to_hidden(combined) hidden = torch.tanh(hidden) out = self.combined_to_middle(combined) out = nn.functional.relu(out) out = self.dropout(out) out = self.middle_to_out(out) out = self.logsoftmax(out) return out,hidden def init_hidden(self): hidden = torch.zeros(1, self.hidden_size) return hidden class TEXTnetOrder2(nn.Module): """ In this variant of the TEXTnet network, the value of hidden as used at each time step also includes its value at the previous time step. This fact, not directly apparent by the definition of the class shown below, is made possible by the last parameter, cell, in the header of forward(). As you can see below, at the end of forward(), the value of the cell goes through a linear layer and through a sigmoid nonlinearity. By the way, since the sigmoid saturates at 0 and 1, it can act like a switch. Later when I use this class in the training function, you will see the cell values being used in such a manner that the hidden state at each time step is mixed with the hidden state at the previous time step, but only to the extent allowed by the switching action of the Sigmoid. Class Path: DLStudio -> TextClassification -> TEXTnetOrder2 """ def __init__(self, input_size, hidden_size, output_size): super(DLStudio.TextClassification.TEXTnetOrder2, self).__init__() self.input_size = input_size self.hidden_size = hidden_size self.output_size = output_size self.combined_to_hidden = nn.Linear(input_size + 2*hidden_size, hidden_size) self.combined_to_middle = nn.Linear(input_size + 2*hidden_size, 100) self.middle_to_out = nn.Linear(100, output_size) self.logsoftmax = nn.LogSoftmax(dim=1) self.dropout = nn.Dropout(p=0.1) # for the cell self.linear_for_cell = nn.Linear(hidden_size, hidden_size) def forward(self, input, hidden, cell): combined = torch.cat((input, hidden, cell), 1) hidden = self.combined_to_hidden(combined) hidden = torch.tanh(hidden) out = self.combined_to_middle(combined) out = nn.functional.relu(out) out = self.dropout(out) out = self.middle_to_out(out) out = self.logsoftmax(out) hidden_clone = hidden.clone() cell = torch.sigmoid(self.linear_for_cell(hidden_clone)) return out,hidden,cell def initialize_cell(self): weight = next(self.linear_for_cell.parameters()).data cell = weight.new(1, self.hidden_size).zero_() return cell def init_hidden(self): hidden = torch.zeros(1, self.hidden_size) return hidden class GRUnet(nn.Module): """ Source: https://blog.floydhub.com/gru-with-pytorch/ with the only modification that the final output of forward() is now routed through LogSoftmax activation. Class Path: DLStudio -> TextClassification -> GRUnet """ def __init__(self, input_size, hidden_size, output_size, num_layers, drop_prob=0.2): super(DLStudio.TextClassification.GRUnet, self).__init__() self.hidden_size = hidden_size self.num_layers = num_layers self.gru = nn.GRU(input_size, hidden_size, num_layers) self.fc = nn.Linear(hidden_size, output_size) self.relu = nn.ReLU() self.logsoftmax = nn.LogSoftmax(dim=1) def forward(self, x, h): out, h = self.gru(x, h) out = self.fc(self.relu(out[:,-1])) out = self.logsoftmax(out) return out, h def init_hidden(self): weight = next(self.parameters()).data # batch_size hidden = weight.new( self.num_layers, 1, self.hidden_size ).zero_() return hidden def save_model(self, model): "Save the trained model to a disk file" torch.save(model.state_dict(), self.dl_studio.path_saved_model) def run_code_for_training_with_TEXTnet(self, net, display_train_loss=False): filename_for_out = "performance_numbers_" + str(self.dl_studio.epochs) + ".txt" FILE = open(filename_for_out, 'w') net.to(self.dl_studio.device) ## Note that the TEXTnet and TEXTnetOrder2 both produce LogSoftmax output: criterion = nn.NLLLoss() accum_times = [] optimizer = optim.SGD(net.parameters(), lr=self.dl_studio.learning_rate, momentum=self.dl_studio.momentum) start_time = time.perf_counter() training_loss_tally = [] for epoch in range(self.dl_studio.epochs): print("") running_loss = 0.0 for i, data in enumerate(self.train_dataloader): hidden = net.init_hidden().to(self.dl_studio.device) review_tensor,category,sentiment = data['review'], data['category'], data['sentiment'] review_tensor = review_tensor.to(self.dl_studio.device) sentiment = sentiment.to(self.dl_studio.device) optimizer.zero_grad() input = torch.zeros(1,review_tensor.shape[2]) input = input.to(self.dl_studio.device) for k in range(review_tensor.shape[1]): input[0,:] = review_tensor[0,k] output, hidden = net(input, hidden) loss = criterion(output, torch.argmax(sentiment,1)) running_loss += loss.item() # loss.backward(retain_graph=True) loss.backward() optimizer.step() if i % 200 == 199: avg_loss = running_loss / float(200) training_loss_tally.append(avg_loss) current_time = time.perf_counter() time_elapsed = current_time-start_time print("[epoch:%d iter:%4d elapsed_time: %4d secs] loss: %.5f" % (epoch+1,i+1, time_elapsed,avg_loss)) accum_times.append(current_time-start_time) FILE.write("%.3f\n" % avg_loss) FILE.flush() running_loss = 0.0 print("\nFinished Training\n") self.save_model(net) if display_train_loss: plt.figure(figsize=(10,5)) plt.title("Training Loss vs. Iterations") plt.plot(training_loss_tally) plt.xlabel("iterations") plt.ylabel("training loss") # plt.legend() plt.legend(["Plot of loss versus iterations"], fontsize="x-large") plt.savefig("training_loss.png") plt.show() def run_code_for_training_with_TEXTnetOrder2(self, net, display_train_loss=False): filename_for_out = "performance_numbers_" + str(self.dl_studio.epochs) + ".txt" FILE = open(filename_for_out, 'w') net.to(self.dl_studio.device) ## Note that the TEXTnet and TEXTnetOrder2 both produce LogSoftmax output: criterion = nn.NLLLoss() accum_times = [] optimizer = optim.SGD(net.parameters(), lr=self.dl_studio.learning_rate, momentum=self.dl_studio.momentum) start_time = time.perf_counter() training_loss_tally = [] for epoch in range(self.dl_studio.epochs): print("") running_loss = 0.0 for i, data in enumerate(self.train_dataloader): hidden = net.init_hidden().to(self.dl_studio.device) cell_prev = net.initialize_cell().to(self.dl_studio.device) cell_prev_2_prev = net.initialize_cell().to(self.dl_studio.device) review_tensor,category,sentiment = data['review'], data['category'], data['sentiment'] review_tensor = review_tensor.to(self.dl_studio.device) sentiment = sentiment.to(self.dl_studio.device) optimizer.zero_grad() input = torch.zeros(1,review_tensor.shape[2]) input = input.to(self.dl_studio.device) for k in range(review_tensor.shape[1]): input[0,:] = review_tensor[0,k] output, hidden, cell = net(input, hidden, cell_prev_2_prev) if k == 0: cell_prev = cell else: cell_prev_2_prev = cell_prev cell_prev = cell loss = criterion(output, torch.argmax(sentiment,1)) running_loss += loss.item() loss.backward() optimizer.step() if i % 200 == 199: avg_loss = running_loss / float(200) training_loss_tally.append(avg_loss) current_time = time.perf_counter() time_elapsed = current_time-start_time print("[epoch:%d iter:%4d elapsed_time: %4d secs] loss: %.5f" % (epoch+1,i+1, time_elapsed,avg_loss)) accum_times.append(current_time-start_time) FILE.write("%.3f\n" % avg_loss) FILE.flush() running_loss = 0.0 print("\nFinished Training\n") self.save_model(net) if display_train_loss: plt.figure(figsize=(10,5)) plt.title("Training Loss vs. Iterations") plt.plot(training_loss_tally) plt.xlabel("iterations") plt.ylabel("training loss") # plt.legend() plt.legend(["Plot of loss versus iterations"], fontsize="x-large") plt.savefig("training_loss.png") plt.show() def run_code_for_training_for_text_classification_with_GRU(self, net, display_train_loss=False): filename_for_out = "performance_numbers_" + str(self.dl_studio.epochs) + ".txt" FILE = open(filename_for_out, 'w') net.to(self.dl_studio.device) ## Note that the GRUnet now produces the LogSoftmax output: criterion = nn.NLLLoss() accum_times = [] optimizer = optim.SGD(net.parameters(), lr=self.dl_studio.learning_rate, momentum=self.dl_studio.momentum) start_time = time.perf_counter() training_loss_tally = [] for epoch in range(self.dl_studio.epochs): print("") running_loss = 0.0 for i, data in enumerate(self.train_dataloader): review_tensor,category,sentiment = data['review'], data['category'], data['sentiment'] review_tensor = review_tensor.to(self.dl_studio.device) sentiment = sentiment.to(self.dl_studio.device) ## The following type conversion needed for MSELoss: ##sentiment = sentiment.float() optimizer.zero_grad() hidden = net.init_hidden().to(self.dl_studio.device) for k in range(review_tensor.shape[1]): output, hidden = net(torch.unsqueeze(torch.unsqueeze(review_tensor[0,k],0),0), hidden) ## If using NLLLoss, CrossEntropyLoss loss = criterion(output, torch.argmax(sentiment, 1)) ## If using MSELoss: ## loss = criterion(output, sentiment) running_loss += loss.item() loss.backward() optimizer.step() if i % 200 == 199: avg_loss = running_loss / float(200) training_loss_tally.append(avg_loss) current_time = time.perf_counter() time_elapsed = current_time-start_time print("[epoch:%d iter:%4d elapsed_time:%4d secs] loss: %.5f" % (epoch+1,i+1, time_elapsed,avg_loss)) accum_times.append(current_time-start_time) FILE.write("%.3f\n" % avg_loss) FILE.flush() running_loss = 0.0 print("Total Training Time: {}".format(str(sum(accum_times)))) print("\nFinished Training\n") self.save_model(net) if display_train_loss: plt.figure(figsize=(10,5)) plt.title("Training Loss vs. Iterations") plt.plot(training_loss_tally) plt.xlabel("iterations") plt.ylabel("training loss") # plt.legend() plt.legend(["Plot of loss versus iterations"], fontsize="x-large") plt.savefig("training_loss.png") plt.show() def run_code_for_testing_with_TEXTnet(self, net): net.load_state_dict(torch.load(self.dl_studio.path_saved_model)) net.to(self.dl_studio.device) classification_accuracy = 0.0 negative_total = 0 positive_total = 0 confusion_matrix = torch.zeros(2,2) with torch.no_grad(): for i, data in enumerate(self.test_dataloader): review_tensor,category,sentiment = data['review'], data['category'], data['sentiment'] input = torch.zeros(1,review_tensor.shape[2]).to(self.dl_studio.device) hidden = net.init_hidden().to(self.dl_studio.device) for k in range(review_tensor.shape[1]): input[0,:] = review_tensor[0,k] output, hidden = net(input, hidden) predicted_idx = torch.argmax(output).item() gt_idx = torch.argmax(sentiment).item() if i % 100 == 99: print(" [i=%4d] predicted_label=%d gt_label=%d" % (i+1, predicted_idx,gt_idx)) if predicted_idx == gt_idx: classification_accuracy += 1 if gt_idx == 0: negative_total += 1 elif gt_idx == 1: positive_total += 1 confusion_matrix[gt_idx,predicted_idx] += 1 print("\nOverall classification accuracy: %0.2f%%" % (float(classification_accuracy) * 100 /float(i))) out_percent = np.zeros((2,2), dtype='float') out_percent[0,0] = "%.3f" % (100 * confusion_matrix[0,0] / float(negative_total)) out_percent[0,1] = "%.3f" % (100 * confusion_matrix[0,1] / float(negative_total)) out_percent[1,0] = "%.3f" % (100 * confusion_matrix[1,0] / float(positive_total)) out_percent[1,1] = "%.3f" % (100 * confusion_matrix[1,1] / float(positive_total)) print("\n\nNumber of positive reviews tested: %d" % positive_total) print("\n\nNumber of negative reviews tested: %d" % negative_total) print("\n\nDisplaying the confusion matrix:\n") out_str = " " out_str += "%18s %18s" % ('predicted negative', 'predicted positive') print(out_str + "\n") for i,label in enumerate(['true negative', 'true positive']): out_str = "%12s: " % label for j in range(2): out_str += "%18s" % out_percent[i,j] print(out_str) def run_code_for_testing_with_TEXTnetOrder2(self, net): net.load_state_dict(torch.load(self.dl_studio.path_saved_model)) net.to(self.dl_studio.device) classification_accuracy = 0.0 negative_total = 0 positive_total = 0 confusion_matrix = torch.zeros(2,2) with torch.no_grad(): for i, data in enumerate(self.test_dataloader): cell_prev = net.initialize_cell() cell_prev_2_prev = net.initialize_cell() review_tensor,category,sentiment = data['review'], data['category'], data['sentiment'] input = torch.zeros(1,review_tensor.shape[2]).to(self.dl_studio.device) hidden = net.init_hidden().to(self.dl_studio.device) for k in range(review_tensor.shape[1]): input[0,:] = review_tensor[0,k] output, hidden, cell = net(input, hidden, cell_prev_2_prev) if k == 0: cell_prev = cell else: cell_prev_2_prev = cell_prev cell_prev = cell predicted_idx = torch.argmax(output).item() gt_idx = torch.argmax(sentiment).item() if i % 100 == 99: print(" [i=%4d] predicted_label=%d gt_label=%d" % (i+1, predicted_idx,gt_idx)) if predicted_idx == gt_idx: classification_accuracy += 1 if gt_idx == 0: negative_total += 1 elif gt_idx == 1: positive_total += 1 confusion_matrix[gt_idx,predicted_idx] += 1 print("\nOverall classification accuracy: %0.2f%%" % (float(classification_accuracy) * 100 /float(i))) out_percent = np.zeros((2,2), dtype='float') out_percent[0,0] = "%.3f" % (100 * confusion_matrix[0,0] / float(negative_total)) out_percent[0,1] = "%.3f" % (100 * confusion_matrix[0,1] / float(negative_total)) out_percent[1,0] = "%.3f" % (100 * confusion_matrix[1,0] / float(positive_total)) out_percent[1,1] = "%.3f" % (100 * confusion_matrix[1,1] / float(positive_total)) print("\n\nNumber of positive reviews tested: %d" % positive_total) print("\n\nNumber of negative reviews tested: %d" % negative_total) print("\n\nDisplaying the confusion matrix:\n") out_str = " " out_str += "%18s %18s" % ('predicted negative', 'predicted positive') print(out_str + "\n") for i,label in enumerate(['true negative', 'true positive']): out_str = "%12s: " % label for j in range(2): out_str += "%18s" % out_percent[i,j] print(out_str) def run_code_for_testing_text_classification_with_GRU(self, net): net.load_state_dict(torch.load(self.dl_studio.path_saved_model)) net.to(self.dl_studio.device) classification_accuracy = 0.0 negative_total = 0 positive_total = 0 confusion_matrix = torch.zeros(2,2) with torch.no_grad(): for i, data in enumerate(self.test_dataloader): review_tensor,category,sentiment = data['review'], data['category'], data['sentiment'] hidden = net.init_hidden().to(self.dl_studio.device) for k in range(review_tensor.shape[1]): output, hidden = net(torch.unsqueeze(torch.unsqueeze(review_tensor[0,k],0),0), hidden) predicted_idx = torch.argmax(output).item() gt_idx = torch.argmax(sentiment).item() if i % 100 == 99: print(" [i=%d] predicted_label=%d gt_label=%d\n\n" % (i+1, predicted_idx,gt_idx)) if predicted_idx == gt_idx: classification_accuracy += 1 if gt_idx == 0: negative_total += 1 elif gt_idx == 1: positive_total += 1 confusion_matrix[gt_idx,predicted_idx] += 1 print("\nOverall classification accuracy: %0.2f%%" % (float(classification_accuracy) * 100 /float(i))) out_percent = np.zeros((2,2), dtype='float') out_percent[0,0] = "%.3f" % (100 * confusion_matrix[0,0] / float(negative_total)) out_percent[0,1] = "%.3f" % (100 * confusion_matrix[0,1] / float(negative_total)) out_percent[1,0] = "%.3f" % (100 * confusion_matrix[1,0] / float(positive_total)) out_percent[1,1] = "%.3f" % (100 * confusion_matrix[1,1] / float(positive_total)) print("\n\nNumber of positive reviews tested: %d" % positive_total) print("\n\nNumber of negative reviews tested: %d" % negative_total) print("\n\nDisplaying the confusion matrix:\n") out_str = " " out_str += "%18s %18s" % ('predicted negative', 'predicted positive') print(out_str + "\n") for i,label in enumerate(['true negative', 'true positive']): out_str = "%12s: " % label for j in range(2): out_str += "%18s" % out_percent[i,j] print(out_str) ###%%% ######################################################################################## ######## Start Definition of Inner Class TextClassificationWithEmbeddings ############ class TextClassificationWithEmbeddings(nn.Module): """ The text processing class described previously, TextClassification, was based on using one-hot vectors for representing the words. The main challenge we faced with one-hot vectors was that the larger the size of the training dataset, the larger the size of the vocabulary, and, therefore, the larger the size of the one-hot vectors. The increase in the size of the one-hot vectors led to a model with a significantly larger number of learnable parameters --- and, that, in turn, created a need for a still larger training dataset. Sounds like a classic example of a vicious circle. In this section, I use the idea of word embeddings to break out of this vicious circle. Word embeddings are fixed-sized numerical representations for words that are learned on the basis of the similarity of word contexts. The original and still the most famous of these representations are known as the word2vec embeddings. The embeddings that I use in this section consist of pre-trained 300-element word vectors for 3 million words and phrases as learned from Google News reports. I access these embeddings through the popular Gensim library. Class Path: DLStudio -> TextClassificationWithEmbeddings """ def __init__(self, dl_studio,dataserver_train=None,dataserver_test=None,dataset_file_train=None,dataset_file_test=None): super(DLStudio.TextClassificationWithEmbeddings, self).__init__() self.dl_studio = dl_studio self.dataserver_train = dataserver_train self.dataserver_test = dataserver_test class SentimentAnalysisDataset(torch.utils.data.Dataset): """ In relation to the SentimentAnalysisDataset defined for the TextClassification section of DLStudio, the __getitem__() method of the dataloader must now fetch the embeddings from the word2vec word vectors. Class Path: DLStudio -> TextClassificationWithEmbeddings -> SentimentAnalysisDataset """ def __init__(self, dl_studio, train_or_test, dataset_file, path_to_saved_embeddings=None): super(DLStudio.TextClassificationWithEmbeddings.SentimentAnalysisDataset, self).__init__() import gensim.downloader as gen_api # self.word_vectors = gen_api.load("word2vec-google-news-300") self.path_to_saved_embeddings = path_to_saved_embeddings self.train_or_test = train_or_test root_dir = dl_studio.dataroot f = gzip.open(root_dir + dataset_file, 'rb') dataset = f.read() if path_to_saved_embeddings is not None: import gensim.downloader as genapi from gensim.models import KeyedVectors if os.path.exists(path_to_saved_embeddings + 'vectors.kv'): self.word_vectors = KeyedVectors.load(path_to_saved_embeddings + 'vectors.kv') else: print("""\n\nSince this is your first time to install the word2vec embeddings, it may take""" """\na couple of minutes. The embeddings occupy around 3.6GB of your disk space.\n\n""") self.word_vectors = genapi.load("word2vec-google-news-300") ## 'kv' stands for "KeyedVectors", a special datatype used by gensim because it ## has a smaller footprint than dict self.word_vectors.save(path_to_saved_embeddings + 'vectors.kv') if train_or_test == 'train': if sys.version_info[0] == 3: self.positive_reviews_train, self.negative_reviews_train, self.vocab = pickle.loads(dataset, encoding='latin1') else: self.positive_reviews_train, self.negative_reviews_train, self.vocab = pickle.loads(dataset) self.categories = sorted(list(self.positive_reviews_train.keys())) self.category_sizes_train_pos = {category : len(self.positive_reviews_train[category]) for category in self.categories} self.category_sizes_train_neg = {category : len(self.negative_reviews_train[category]) for category in self.categories} self.indexed_dataset_train = [] for category in self.positive_reviews_train: for review in self.positive_reviews_train[category]: self.indexed_dataset_train.append([review, category, 1]) for category in self.negative_reviews_train: for review in self.negative_reviews_train[category]: self.indexed_dataset_train.append([review, category, 0]) random.shuffle(self.indexed_dataset_train) elif train_or_test == 'test': if sys.version_info[0] == 3: self.positive_reviews_test, self.negative_reviews_test, self.vocab = pickle.loads(dataset, encoding='latin1') else: self.positive_reviews_test, self.negative_reviews_test, self.vocab = pickle.loads(dataset) self.vocab = sorted(self.vocab) self.categories = sorted(list(self.positive_reviews_test.keys())) self.category_sizes_test_pos = {category : len(self.positive_reviews_test[category]) for category in self.categories} self.category_sizes_test_neg = {category : len(self.negative_reviews_test[category]) for category in self.categories} self.indexed_dataset_test = [] for category in self.positive_reviews_test: for review in self.positive_reviews_test[category]: self.indexed_dataset_test.append([review, category, 1]) for category in self.negative_reviews_test: for review in self.negative_reviews_test[category]: self.indexed_dataset_test.append([review, category, 0]) random.shuffle(self.indexed_dataset_test) def review_to_tensor(self, review): list_of_embeddings = [] for i,word in enumerate(review): if word in self.word_vectors.key_to_index: embedding = self.word_vectors[word] list_of_embeddings.append(np.array(embedding)) else: next # review_tensor = torch.FloatTensor( list_of_embeddings ) review_tensor = torch.FloatTensor( np.array(list_of_embeddings) ) return review_tensor def sentiment_to_tensor(self, sentiment): """ Sentiment is ordinarily just a binary valued thing. It is 0 for negative sentiment and 1 for positive sentiment. We need to pack this value in a two-element tensor. """ sentiment_tensor = torch.zeros(2) if sentiment == 1: sentiment_tensor[1] = 1 elif sentiment == 0: sentiment_tensor[0] = 1 sentiment_tensor = sentiment_tensor.type(torch.long) return sentiment_tensor def __len__(self): if self.train_or_test == 'train': return len(self.indexed_dataset_train) elif self.train_or_test == 'test': return len(self.indexed_dataset_test) def __getitem__(self, idx): sample = self.indexed_dataset_train[idx] if self.train_or_test == 'train' else self.indexed_dataset_test[idx] review = sample[0] review_category = sample[1] review_sentiment = sample[2] review_sentiment = self.sentiment_to_tensor(review_sentiment) review_tensor = self.review_to_tensor(review) category_index = self.categories.index(review_category) sample = {'review' : review_tensor, 'category' : category_index, # should be converted to tensor, but not yet used 'sentiment' : review_sentiment } return sample def load_SentimentAnalysisDataset(self, dataserver_train, dataserver_test ): self.train_dataloader = torch.utils.data.DataLoader(dataserver_train, batch_size=self.dl_studio.batch_size,shuffle=True, num_workers=2) self.test_dataloader = torch.utils.data.DataLoader(dataserver_test, batch_size=self.dl_studio.batch_size,shuffle=False, num_workers=2) class TEXTnetWithEmbeddings(nn.Module): """ This is embeddings version of the class TEXTnet class shown previously. Since we are using the word2vec embeddings, we know that the input size for each word vector will be a constant value of 300. Overall, though, this network is meant for semantic classification of variable-length sentiment data. Based on my limited testing, the performance of this network is very poor because it has no protection against vanishing gradients when used in an RNN. Class Path: DLStudio -> TextClassificationWithEmbeddings -> TEXTnetWithEmbeddings """ def __init__(self, input_size, hidden_size, output_size): super(DLStudio.TextClassificationWithEmbeddings.TEXTnetWithEmbeddings, self).__init__() self.input_size = input_size self.hidden_size = hidden_size self.output_size = output_size self.combined_to_hidden = nn.Linear(input_size + hidden_size, hidden_size) self.combined_to_middle = nn.Linear(input_size + hidden_size, 100) self.middle_to_out = nn.Linear(100, output_size) self.logsoftmax = nn.LogSoftmax(dim=1) def forward(self, input, hidden): combined = torch.cat((input, hidden), 1) hidden = self.combined_to_hidden(combined) hidden = torch.tanh(hidden) out = self.combined_to_middle(combined) out = nn.functional.relu(out) out = self.middle_to_out(out) out = self.logsoftmax(out) return out,hidden def init_hidden(self): hidden = torch.zeros(1, self.hidden_size) return hidden class TEXTnetOrder2WithEmbeddings(nn.Module): """ This is an embeddings version of the TEXTnetOrder2 class shown previously. With the embeddings, we know that the size the tensor for word will be 300. As to how TEXTnetOrder2 differs from TEXTnet, the value of hidden as used at each time step also includes its value at the previous time step. This fact, not directly apparent by the definition of the class shown below, is made possible by the last parameter, cell, in the header of forward(). All you can see here, at the end of forward(), is that the value of cell goes through a linear layer and through a sigmoid nonlinearity. By the way, since the sigmoid saturates at 0 and 1, it can act like a switch. Later when I use this class in the training function, you will see the cell values being used in such a manner that the hidden state at each time step is mixed with the hidden state at the previous time step. Class Path: DLStudio -> TextClassificationWithEmbeddings -> TEXTnetOrder2WithEmbeddings """ def __init__(self, hidden_size, output_size, input_size=300): super(DLStudio.TextClassificationWithEmbeddings.TEXTnetOrder2WithEmbeddings, self).__init__() self.input_size = input_size self.hidden_size = hidden_size self.output_size = output_size self.combined_to_hidden = nn.Linear(input_size + 2*hidden_size, hidden_size) self.combined_to_middle = nn.Linear(input_size + 2*hidden_size, 100) self.middle_to_out = nn.Linear(100, output_size) self.logsoftmax = nn.LogSoftmax(dim=1) self.dropout = nn.Dropout(p=0.1) # for the cell self.linear_for_cell = nn.Linear(hidden_size, hidden_size) def forward(self, input, hidden, cell): combined = torch.cat((input, hidden, cell), 1) hidden = self.combined_to_hidden(combined) hidden = torch.tanh(hidden) out = self.combined_to_middle(combined) out = nn.functional.relu(out) out = self.dropout(out) out = self.middle_to_out(out) out = self.logsoftmax(out) hidden_clone = hidden.clone() # cell = torch.tanh(self.linear_for_cell(hidden_clone)) cell = torch.sigmoid(self.linear_for_cell(hidden_clone)) return out,hidden,cell def initialize_cell(self): weight = next(self.linear_for_cell.parameters()).data cell = weight.new(1, self.hidden_size).zero_() return cell def init_hidden(self): hidden = torch.zeros(1, self.hidden_size) return hidden class GRUnetWithEmbeddings(nn.Module): """ For this embeddings adapted version of the GRUnet shown earlier, we can assume that the 'input_size' for a tensor representing a word is always 300. Source: https://blog.floydhub.com/gru-with-pytorch/ with the only modification that the final output of forward() is now routed through LogSoftmax activation. Class Path: DLStudio -> TextClassificationWithEmbeddings -> GRUnetWithEmbeddings """ def __init__(self, input_size, hidden_size, output_size, num_layers=1): """ -- input_size is the size of the tensor for each word in a sequence of words. If you word2vec embedding, the value of this variable will always be equal to 300. -- hidden_size is the size of the hidden state in the RNN -- output_size is the size of output of the RNN. For binary classification of input text, output_size is 2. -- num_layers creates a stack of GRUs """ super(DLStudio.TextClassificationWithEmbeddings.GRUnetWithEmbeddings, self).__init__() self.input_size = input_size self.hidden_size = hidden_size self.num_layers = num_layers self.gru = nn.GRU(input_size, hidden_size, num_layers) self.fc = nn.Linear(hidden_size, output_size) self.relu = nn.ReLU() self.logsoftmax = nn.LogSoftmax(dim=1) def forward(self, x, h): out, h = self.gru(x, h) out = self.fc(self.relu(out[:,-1])) out = self.logsoftmax(out) return out, h def init_hidden(self): weight = next(self.parameters()).data # num_layers batch_size hidden_size hidden = weight.new( 2, 1, self.hidden_size ).zero_() return hidden def save_model(self, model): "Save the trained model to a disk file" torch.save(model.state_dict(), self.dl_studio.path_saved_model) def run_code_for_training_with_TEXTnet_word2vec(self, net, display_train_loss=False): filename_for_out = "performance_numbers_" + str(self.dl_studio.epochs) + ".txt" FILE = open(filename_for_out, 'w') net = copy.deepcopy(net) net = net.to(self.dl_studio.device) ## Note that the TEXTnet and TEXTnetOrder2 both produce LogSoftmax output. So we ## use nn.NLLLoss. The combined effect of LogSoftMax and NLLLoss is the same as ## for the CrossEntropyLoss criterion = nn.NLLLoss() accum_times = [] optimizer = optim.SGD(net.parameters(), lr=self.dl_studio.learning_rate, momentum=self.dl_studio.momentum) start_time = time.perf_counter() training_loss_tally = [] for epoch in range(self.dl_studio.epochs): print("") running_loss = 0.0 for i, data in enumerate(self.train_dataloader): hidden = net.init_hidden().to(self.dl_studio.device) review_tensor,category,sentiment = data['review'], data['category'], data['sentiment'] review_tensor = review_tensor.to(self.dl_studio.device) sentiment = sentiment.to(self.dl_studio.device) optimizer.zero_grad() input = torch.zeros(1,review_tensor.shape[2]).to(self.dl_studio.device) for k in range(review_tensor.shape[1]): input[0,:] = review_tensor[0,k] output, hidden = net(input, hidden) loss = criterion(output, torch.argmax(sentiment,1)) running_loss += loss.item() loss.backward(retain_graph=True) optimizer.step() if i % 200 == 199: avg_loss = running_loss / float(200) training_loss_tally.append(avg_loss) running_loss = 0.0 current_time = time.perf_counter() time_elapsed = current_time-start_time print("[epoch:%d iter:%4d elapsed_time: %4d secs] loss: %.5f" % (epoch+1,i+1, time_elapsed,avg_loss)) accum_times.append(current_time-start_time) FILE.write("%.3f\n" % avg_loss) FILE.flush() print("\nFinished Training\n\n") self.save_model(net) if display_train_loss: plt.figure(figsize=(10,5)) plt.title("Training Loss vs. Iterations") plt.plot(training_loss_tally) plt.xlabel("iterations") plt.ylabel("training loss") # plt.legend() plt.legend(["Plot of loss versus iterations"], fontsize="x-large") plt.savefig("training_loss.png") plt.show() def run_code_for_training_with_TEXTnetOrder2_word2vec(self, net, display_train_loss=False): filename_for_out = "performance_numbers_" + str(self.dl_studio.epochs) + ".txt" FILE = open(filename_for_out, 'w') net = copy.deepcopy(net) net.to(self.dl_studio.device) ## Note that the TEXTnet and TEXTnetOrder2 both produce LogSoftmax output: criterion = nn.NLLLoss() accum_times = [] optimizer = optim.SGD(net.parameters(), lr=self.dl_studio.learning_rate, momentum=self.dl_studio.momentum) start_time = time.perf_counter() training_loss_tally = [] for epoch in range(self.dl_studio.epochs): print("") running_loss = 0.0 for i, data in enumerate(self.train_dataloader): cell_prev = net.initialize_cell().to(self.dl_studio.device) cell_prev_2_prev = net.initialize_cell().to(self.dl_studio.device) hidden = net.init_hidden().to(self.dl_studio.device) review_tensor,category,sentiment = data['review'], data['category'], data['sentiment'] review_tensor = review_tensor.to(self.dl_studio.device) sentiment = sentiment.to(self.dl_studio.device) optimizer.zero_grad() input = torch.zeros(1,review_tensor.shape[2]) input = input.to(self.dl_studio.device) for k in range(review_tensor.shape[1]): input[0,:] = review_tensor[0,k] output, hidden, cell = net(input, hidden, cell_prev_2_prev) if k == 0: cell_prev = cell else: cell_prev_2_prev = cell_prev cell_prev = cell loss = criterion(output, torch.argmax(sentiment,1)) running_loss += loss.item() loss.backward() optimizer.step() if i % 200 == 199: avg_loss = running_loss / float(200) training_loss_tally.append(avg_loss) current_time = time.perf_counter() time_elapsed = current_time-start_time print("[epoch:%d iter:%4d elapsed_time: %4d secs] loss: %.5f" % (epoch+1,i+1, time_elapsed,avg_loss)) accum_times.append(current_time-start_time) FILE.write("%.3f\n" % avg_loss) FILE.flush() running_loss = 0.0 print("\nFinished Training\n") self.save_model(net) if display_train_loss: plt.figure(figsize=(10,5)) plt.title("Training Loss vs. Iterations") plt.plot(training_loss_tally) plt.xlabel("iterations") plt.ylabel("training loss") # plt.legend() plt.legend(["Plot of loss versus iterations"], fontsize="x-large") plt.savefig("training_loss.png") plt.show() def run_code_for_training_for_text_classification_with_GRU_word2vec(self, net, display_train_loss=False): filename_for_out = "performance_numbers_" + str(self.dl_studio.epochs) + ".txt" FILE = open(filename_for_out, 'w') net = copy.deepcopy(net) net = net.to(self.dl_studio.device) ## Note that the GRUnet now produces the LogSoftmax output: criterion = nn.NLLLoss() accum_times = [] optimizer = optim.SGD(net.parameters(), lr=self.dl_studio.learning_rate, momentum=self.dl_studio.momentum) training_loss_tally = [] start_time = time.perf_counter() for epoch in range(self.dl_studio.epochs): print("") running_loss = 0.0 for i, data in enumerate(self.train_dataloader): review_tensor,category,sentiment = data['review'], data['category'], data['sentiment'] review_tensor = review_tensor.to(self.dl_studio.device) sentiment = sentiment.to(self.dl_studio.device) ## The following type conversion needed for MSELoss: ##sentiment = sentiment.float() optimizer.zero_grad() hidden = net.init_hidden().to(self.dl_studio.device) for k in range(review_tensor.shape[1]): output, hidden = net(torch.unsqueeze(torch.unsqueeze(review_tensor[0,k],0),0), hidden) loss = criterion(output, torch.argmax(sentiment, 1)) running_loss += loss.item() loss.backward() optimizer.step() if i % 200 == 199: avg_loss = running_loss / float(200) training_loss_tally.append(avg_loss) current_time = time.perf_counter() time_elapsed = current_time-start_time print("[epoch:%d iter:%4d elapsed_time:%4d secs] loss: %.5f" % (epoch+1,i+1, time_elapsed,avg_loss)) accum_times.append(current_time-start_time) FILE.write("%.5f\n" % avg_loss) FILE.flush() running_loss = 0.0 self.save_model(net) print("Total Training Time: {}".format(str(sum(accum_times)))) print("\nFinished Training\n\n") if display_train_loss: plt.figure(figsize=(10,5)) plt.title("Training Loss vs. Iterations") plt.plot(training_loss_tally) plt.xlabel("iterations") plt.ylabel("training loss") # plt.legend() plt.legend(["Plot of loss versus iterations"], fontsize="x-large") plt.savefig("training_loss.png") plt.show() def run_code_for_testing_with_TEXTnet_word2vec(self, net): net.load_state_dict(torch.load(self.dl_studio.path_saved_model)) net.to(self.dl_studio.device) classification_accuracy = 0.0 negative_total = 0 positive_total = 0 confusion_matrix = torch.zeros(2,2) with torch.no_grad(): for i, data in enumerate(self.test_dataloader): review_tensor,category,sentiment = data['review'], data['category'], data['sentiment'] review_tensor = review_tensor.to(self.dl_studio.device) category = category.to(self.dl_studio.device) sentiment = sentiment.to(self.dl_studio.device) input = torch.zeros(1,review_tensor.shape[2]).to(self.dl_studio.device) hidden = net.init_hidden().to(self.dl_studio.device) for k in range(review_tensor.shape[1]): input[0,:] = review_tensor[0,k] output, hidden = net(input, hidden) predicted_idx = torch.argmax(output).item() gt_idx = torch.argmax(sentiment).item() if i % 100 == 99: print(" [i=%4d] predicted_label=%d gt_label=%d" % (i+1, predicted_idx,gt_idx)) if predicted_idx == gt_idx: classification_accuracy += 1 if gt_idx == 0: negative_total += 1 elif gt_idx == 1: positive_total += 1 confusion_matrix[gt_idx,predicted_idx] += 1 print("\nOverall classification accuracy: %0.2f%%" % (float(classification_accuracy) * 100 /float(i))) out_percent = np.zeros((2,2), dtype='float') out_percent[0,0] = "%.3f" % (100 * confusion_matrix[0,0] / float(negative_total)) out_percent[0,1] = "%.3f" % (100 * confusion_matrix[0,1] / float(negative_total)) out_percent[1,0] = "%.3f" % (100 * confusion_matrix[1,0] / float(positive_total)) out_percent[1,1] = "%.3f" % (100 * confusion_matrix[1,1] / float(positive_total)) print("\n\nNumber of positive reviews tested: %d" % positive_total) print("\n\nNumber of negative reviews tested: %d" % negative_total) print("\n\nDisplaying the confusion matrix:\n") out_str = " " out_str += "%18s %18s" % ('predicted negative', 'predicted positive') print(out_str + "\n") for i,label in enumerate(['true negative', 'true positive']): out_str = "%12s%%: " % label for j in range(2): out_str += "%18s%%" % out_percent[i,j] print(out_str) def run_code_for_testing_with_TEXTnetOrder2_word2vec(self, net): net.load_state_dict(torch.load(self.dl_studio.path_saved_model)) net.to(self.dl_studio.device) classification_accuracy = 0.0 negative_total = 0 positive_total = 0 confusion_matrix = torch.zeros(2,2) with torch.no_grad(): for i, data in enumerate(self.test_dataloader): cell_prev = net.initialize_cell() cell_prev_2_prev = net.initialize_cell() review_tensor,category,sentiment = data['review'], data['category'], data['sentiment'] input = torch.zeros(1,review_tensor.shape[2]).to(self.dl_studio.device) hidden = net.init_hidden().to(self.dl_studio.device) for k in range(review_tensor.shape[1]): input[0,:] = review_tensor[0,k] output, hidden, cell = net(input, hidden, cell_prev_2_prev) if k == 0: cell_prev = cell else: cell_prev_2_prev = cell_prev cell_prev = cell predicted_idx = torch.argmax(output).item() gt_idx = torch.argmax(sentiment).item() if i % 100 == 99: print(" [i=%4d] predicted_label=%d gt_label=%d" % (i+1, predicted_idx,gt_idx)) if predicted_idx == gt_idx: classification_accuracy += 1 if gt_idx == 0: negative_total += 1 elif gt_idx == 1: positive_total += 1 confusion_matrix[gt_idx,predicted_idx] += 1 print("\nOverall classification accuracy: %0.2f%%" % (float(classification_accuracy) * 100 /float(i))) out_percent = np.zeros((2,2), dtype='float') out_percent[0,0] = "%.3f" % (100 * confusion_matrix[0,0] / float(negative_total)) out_percent[0,1] = "%.3f" % (100 * confusion_matrix[0,1] / float(negative_total)) out_percent[1,0] = "%.3f" % (100 * confusion_matrix[1,0] / float(positive_total)) out_percent[1,1] = "%.3f" % (100 * confusion_matrix[1,1] / float(positive_total)) print("\n\nNumber of positive reviews tested: %d" % positive_total) print("\n\nNumber of negative reviews tested: %d" % negative_total) print("\n\nDisplaying the confusion matrix:\n") out_str = " " out_str += "%18s %18s" % ('predicted negative', 'predicted positive') print(out_str + "\n") for i,label in enumerate(['true negative', 'true positive']): out_str = "%12s: " % label for j in range(2): out_str += "%18s" % out_percent[i,j] print(out_str) def run_code_for_testing_text_classification_with_GRU_word2vec(self, net): net.load_state_dict(torch.load(self.dl_studio.path_saved_model)) classification_accuracy = 0.0 negative_total = 0 positive_total = 0 confusion_matrix = torch.zeros(2,2) with torch.no_grad(): for i, data in enumerate(self.test_dataloader): review_tensor,category,sentiment = data['review'], data['category'], data['sentiment'] hidden = net.init_hidden() for k in range(review_tensor.shape[1]): output, hidden = net(torch.unsqueeze(torch.unsqueeze(review_tensor[0,k],0),0), hidden) predicted_idx = torch.argmax(output).item() gt_idx = torch.argmax(sentiment).item() if i % 100 == 99: print(" [i=%d] predicted_label=%d gt_label=%d" % (i+1, predicted_idx,gt_idx)) if predicted_idx == gt_idx: classification_accuracy += 1 if gt_idx == 0: negative_total += 1 elif gt_idx == 1: positive_total += 1 confusion_matrix[gt_idx,predicted_idx] += 1 print("\nOverall classification accuracy: %0.2f%%" % (float(classification_accuracy) * 100 /float(i))) out_percent = np.zeros((2,2), dtype='float') out_percent[0,0] = "%.3f" % (100 * confusion_matrix[0,0] / float(negative_total)) out_percent[0,1] = "%.3f" % (100 * confusion_matrix[0,1] / float(negative_total)) out_percent[1,0] = "%.3f" % (100 * confusion_matrix[1,0] / float(positive_total)) out_percent[1,1] = "%.3f" % (100 * confusion_matrix[1,1] / float(positive_total)) print("\n\nNumber of positive reviews tested: %d" % positive_total) print("\n\nNumber of negative reviews tested: %d" % negative_total) print("\n\nDisplaying the confusion matrix:\n") out_str = " " out_str += "%18s %18s" % ('predicted negative', 'predicted positive') print(out_str + "\n") for i,label in enumerate(['true negative', 'true positive']): out_str = "%12s: " % label for j in range(2): out_str += "%18s%%" % out_percent[i,j] print(out_str) #_________________________ End of DLStudio Class Definition ___________________________ #______________________________ Test code follows _________________________________ if __name__ == '__main__': pass