STAT
598
Bioinformatics
Seminar (Spring 2019)
Time:
11:30am-12:20pm Location: BRNG
2290
Schedule
1.
Tuesday,
January 8, 2019, 11:30am at BRNG 2290
Min Zhang, Department of Statistics, Purdue
University
·
Course
information: Only registered students should attend.
2.
Tuesday,
January 15, 2019, 11:30am at BRNG 2290
Doug Crabill, Department of Statistics, Purdue
University
·
Title:
Introduction to Linux and Cluster Computing Environments for Bioinformatics –
Part I
·
Abstract
·
Slides
·
Associated reading: http://www.ee.surrey.ac.uk/Teaching/Unix/unixintro.html
3.
Tuesday,
January 22, 2019, 11:30am at BRNG 2290
Lei Liu,
PhD, Division of Biostatistics, Washington University in St. Louis
·
Title: Estimating and testing targeted
mediation effect in the presence of high-dimensional mediators
·
Abstract
·
Associated
reading: Testing
for targeted medication effect with application to human microbiome data
4.
Tuesday,
January 29, 2019, 11:30am at BRNG 2290
Doug Crabill, Department of Statistics, Purdue
University
·
Title:
Introduction to Linux and Cluster Computing Environments for Bioinformatics –
Part II
·
Abstract
·
Slides
·
Associated reading: http://www.ee.surrey.ac.uk/Teaching/Unix/unixintro.html
5.
Tuesday,
February 5, 2019, 11:30am at BRNG 2290
Jun Wan, PhD,
Department of Medical and Molecular Genetics, Indiana University School of
Medicine
·
Title:
Dissect functional interactions between methylated DNA sequences and
transcription factors
·
Abstract
·
Associated
reading:
Methylated
cis-regulatory elements mediate KLF4-dependent gene transactivation and cell
migration
DNA
methylation presents distinct binding sites for human transcription factors
6.
Tuesday,
February 12, 2019, 11:30am at BRNG 2290
Gladys K Andino Bautista, PhD, Purdue University Research
Computing
·
Title:
Hands-on Bioinformatics on Purdue Supercomputers
·
Abstract
·
Slides
·
Associated
reading:
FastQC
https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Trimmomatic (https://doi.org/10.1093/bioinformatics/btu170)
Blast command
line (https://www.ncbi.nlm.nih.gov/books/NBK279670/
7.
Tuesday,
February 19, 2019, 11:30am (Cancelled)
8.
Tuesday,
February 26, 2019, 11:30am at BRNG 2290
Nadia Lanman,
PhD, Purdue University Center for Cancer Research
·
Title:
Alignment of Next-Generation Sequencing Data
·
Abstract
·
Slides
·
Associated
reading:
Alignment
of Next-Generation Sequencing Reads
9.
Tuesday,
March 5, 2019, 11:30am at BRNG 2290 (Cancelled)
10.
Tuesday,
March 12, 2019 – (No Seminar, Spring Break)
11.
Tuesday,
March 19, 2019, 11:30am at BRNG 2290
Jennifer Garvin, PhD,
MBA, RHIA, CTR, CPHQ, CCS, FAHMIA, Health Information Management &
Systems Division, The Ohio State University
·
Title:
Health Information and Informatics: The Heart of the Matter “The Devil is in
the Details”
·
Abstract
·
Associated
reading:
12.
Tuesday,
March 26, 2019, 11:30am at BRNG 2290
Jiping Wang, PhD,
Department of Statistics, Northwestern University
·
Title:
Normalization of Generalized Transcript Degradation Improves Accuracy in RNA-Seq Analysis
·
Abstract
·
Associated
reading:
Normalization
of generalized transcript degradation improves accuracy in RNA-seq analysis
13.
Tuesday,
April 2, 2019, 11:30am at BRNG 2290
Eric Stahlberg, PhD,
Frederick National Laboratory for Cancer Research, Leidos
Biomedical research
·
Title:
Data Science and the Fight Against Cancer - News from the Frontier
·
Abstract
·
Associated
reading:
14.
Tuesday,
April 9, 2019, 11:30am at BRNG 2290
Suthat Liangpunsakul, MD, Department of Medicine, Indiana
University School of Medicine
·
Title:
Serum Metabolomic
Profiling Identifies Key Metabolic Signatures Associated With Pathogenesis of
Alcoholic Liver Disease in Humans
·
Abstract
·
Associated
reading:
15.
Tuesday,
April 23, 2019, 11:30am at BRNG 2290
Warren Kibbe, PhD,
Dept. of Biostatistics & Bioinformatics, Duke University
·
Title:
·
Abstract
·
Associated
reading: