[Embrio-list] Emergence Newsletter Issue 40 - announcements and attachments

Thu Mar 27 17:03:19 EDT 2025

 [cid:3e5e0ac8-67f7-424b-abe5-0223a3c99ef5]
Emergence: A newsletter of discovery, education, and outreach from the EMBRIO Institute

Issue 40: March 27, 2025

DIRECTORS’ NOTE
Plan to join us for the Institute’s next all-hands seminar Monday, April 7th, 3PM EDT with the Staiger lab and Iyer-Pascuzzi lab leading the presentation for Thrust 2A. If you missed any previous seminars, you can find the recording on our shared Box drive in the All-Hands Meetings Recordings folder<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.com%2Fs%2F48uqgrgoy5ygp1tsj2l3lafoy8ubgkop&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923247851%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=VlkSocOApUxTfuvWhNRaw%2F7h71TNPdpHf4texA3O0jU%3D&reserved=0>. The upcoming Thrust level seminar schedule is below.

Investigators: emails went out March 14th with requests for progress reports (due April 14th) and information about Y5 budgeting. We’ve just received today a revised annual reporting template from NSF that will slightly alter how you report some activity. Brent will be in touch directly with details.

Please hold on your calendars (calendar invites were sent in February) the week of June 9-13 for the annual EMBRIO Summer School (Mon-Wed) and Annual Meeting (Thurs-Fri). A forthcoming poll will solicit input from all members regarding formats and topics. This year we are announcing both Best Paper and Best Scientific Figure Competitions – please see the attached announcements – deadline for Best Paper submission is April 9th, and Best Scientific Figure is June 1st.

EMBRIO is participating in the Q-Bio Symposium: “Harnessing Complexity, Revealing Simplicity” happening on Friday, April 11th at University of Notre Dame. RSVP<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.google.com%2Fforms%2Fd%2Fe%2F1FAIpQLSd22Fw8gUkR3MUWZeWxfAQlIGTHoVxQZoA5a1zF9droemvQSg%2Fviewform&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923278643%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=1P9Ka%2FXJaEQhKC%2FUPf18nBoD5Gq3kuW%2FCi2PN0VQR78%3D&reserved=0> by tomorrow Friday, March 28th. The symposium, planned and hosted by the quantitative biology student committee – including the Zartman Lab at the University of Notre Dame, will feature EMBRIO speakers. Trainees and collaborators there is still time to submit a poster. More details about the event can be found below.
You can always check out the latest on EMBRIO research being released in pre-print and peer-reviewed publication on our Institute Google Scholar page<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fscholar.google.com%2Fcitations%3Fhl%3Den%26user%3D-gQWba8AAAAJ%26view_op%3Dlist_works%26authuser%3D1%26sortby%3Dpubdate&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923300111%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=CQf5Wf8Fu%2BkM5XDokmS40YLfawTkQ4ehojCyjmh5NGg%3D&reserved=0>. A new preprint on Digital Cousins is out from the Umulis lab:
Li, L., Mdluli, T., Buzzard, G., and Umulis, D. Digital Cousins: Simultaneous optimization of one model for BMP signaling in distant relatives reveals essential core. March 1, 2025. https://www.biorxiv.org/content/10.1101/2025.02.25.640248v1<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.biorxiv.org%2Fcontent%2F10.1101%2F2025.02.25.640248v1&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923325774%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=UywbvmqfZPejao7FSwP2pARBok390wSdM31njmjLm%2BI%3D&reserved=0>

Congrats to co-first authors Mayesha Mim and Nilay Kumar, along with EMBRIO co-authors from the Zartman lab, for being awarded the Outstanding CBE Department Paper of 2024 at Notre Dame for work on Piezo in Cell Reports:

Mim M.S., Kumar, N., Levis,M..,  Unger, M.F., Miranda,G., Gazzo, D., Robinett,T., and  Zartman, J.J. (2024) Piezo regulates epithelial topology and promotes precision in organ size control, Cell Reports, 43, Issue 7,114398, ISSN 2211-1247, https://doi.org/10.1016/j.celrep.2024.114398<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdoi.org%2F10.1016%2Fj.celrep.2024.114398&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923348348%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=EH90fCgIrreCXhyP5P16qM5WnWGvO15ENO%2BJq3Y3lnU%3D&reserved=0>

Other opportunities and workshops coming up include the free virtual Sloan Mentorship Community of Practice Workshop: Rubrics for Holistic Competitive Decisions, April 22nd, with leadership from EMBRIO Investigator Stephanie Gardner. Please see the attached flyer for details and QR code for the zoom link, but consider registering in advance for this meeting: https://purdue-edu.zoom.us/meeting/register/UvqM_3QWTdacKoLsbGk0Sg   After registering, you will receive a confirmation email containing information about joining the meeting.

The American Society for Cell Biology has opportunity for organizing a workshop session. Those interested please contact Brent (laddb at purdue.edu<mailto:laddb at purdue.edu>) or Jeremy Zartman (jzartman at nd.edu<mailto:jzartman at nd.edu>) The deadline for workshop proposals is April 8th https://www.ascb.org/cellbio2025/sessionproposals/<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.ascb.org%2Fcellbio2025%2Fsessionproposals%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923367609%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=59km3eBLljgPPUJKMP9N4lfa81H1ci2UTi7SpxynPTE%3D&reserved=0>

An additional reminder:  The postdoctoral fellowship opportunity at Notre Dame for those who have successfully completed all requirements for a doctoral degree between June 2023 and September 2025  (deadline is April 6th): Jeremy Zartman is interested in supporting anyone for this fellowship if they are interested and eligible to work in his Multicellular Systems Engineering lab<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsites.nd.edu%2Fzartmanlab%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923382999%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=GptPjUov2AedBqWYiHDCR5TeqJMna22pCAxuWZGGIyg%3D&reserved=0>. Please contact Dr. Zartman to discuss. Details on the University of Notre Dame Provost's Postdoctoral Fellowship in Engineering (deadline is April 6th):  https://engineering.nd.edu/provosts-postdoctoral-fellowships-in-engineering-program/<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fengineering.nd.edu%2Fprovosts-postdoctoral-fellowships-in-engineering-program%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923397576%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=C3nxZhAQuEdAa0ptZ2EBkkLi9vuuI2KRjiuCUejdLhI%3D&reserved=0>

David, Jeremy, Chris, Anjali, Janice, Alejandra, Elsje, and Brent

QUICK LINKS

All-Hands Meetings Recordings<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.com%2Fs%2F48uqgrgoy5ygp1tsj2l3lafoy8ubgkop&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923412074%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=mAMSi0kCFyRfnydyfsdoIFXfpiK3xfF8N0SaQoCiCuM%3D&reserved=0>

Q-Bio Symposium RSVP<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.google.com%2Fforms%2Fd%2Fe%2F1FAIpQLSd22Fw8gUkR3MUWZeWxfAQlIGTHoVxQZoA5a1zF9droemvQSg%2Fviewform&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923425401%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=NsdlC9bmTYQQ00TNzwEHJ7v6%2BiY1z1BIXizACo8DTOA%3D&reserved=0>

Materials from Summer School & Annual Retreat<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.com%2Fs%2Fn0zors2bxkvmlqvv3uf0ng7fxd957atw&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923438531%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=f%2BQeFFryvPsdr0vHeNV0u9o6XaGnmSsdoRq2Wv7%2Ban4%3D&reserved=0>

Institute Skills and Strengths Sharing Platform<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.google.com%2Fpresentation%2Fd%2F1ISHO5p5QXI67UlXJyulCzOtxPeZOiPAUYvpGJqJz4YE%2Fedit%3Fusp%3Dsharing&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923453697%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=T4pGvXlF78BThKoM9yaKdIch9a%2FivIWKufd6QcgJW8s%3D&reserved=0>

Orientation to EMBRIO<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.com%2Fs%2Fom3brzae0z3o9s3c7x2fhxw6n2h1ipjt&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923472995%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=3emqn4Qbsp4j17KQZ6MpXhzQBJsst5veReYV%2BXjWdLQ%3D&reserved=0>

Sign the Data Sharing Policy Agreement<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpurdue.ca1.qualtrics.com%2Fjfe%2Fform%2FSV_25Zs5169Rs1MCNg&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923491393%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=L35fci%2Bgyz0TGE4%2BjLrLMP5iZ%2Fei5edwgyzKEULHVJA%3D&reserved=0>

EMBRIO Personnel List<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.com%2Fs%2Fh6eez5tmit1m3k9oih03phnbm0pb5iv4&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923510833%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=qAudIow5L2XB4ycSXpzsPyUHYuqV08H%2BQBE8PuyvIJA%3D&reserved=0>

Hot Off the Press: New & Recent EMBRIO Journal Papers and Preprints
Let us know about new papers you want to highlight for the EMBRIO community!
Check out our Google Scholar Page<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fscholar.google.com%2Fcitations%3Fhl%3Den%26view_op%3Dlist_works%26authuser%3D1%26gmla%3DAILGF5XygCQiioPdGT3HVqffFxVVw0FQs-FP9VhvTFEGQ-gkUpCpbjphO-RSK4hWWYDdhJGiTmbxfTg6qFY3dnMA3hC8%26user%3D-gQWba8AAAAJ&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923529257%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=02fmn%2BFwTFZsI%2BJQZEgjIjdgCzTIcBryjP56XHdqOjU%3D&reserved=0>
See a more complete list of Scholarly Products produced under support of EMBRIO Institute<https://www.purdue.edu/research/embrio/research/scholarly-products.php>

Li, L., Mdluli, T., Buzzard, G., and Umulis, D. Digital Cousins: Simultaneous optimization of one model for BMP signaling in distant relatives reveals essential core. March 1, 2025. https://www.biorxiv.org/content/10.1101/2025.02.25.640248v1<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.biorxiv.org%2Fcontent%2F10.1101%2F2025.02.25.640248v1&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923548125%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=DL0w4F%2B%2BhgZST0hfsqXDIhmMWcap0ZMXDALW97FlbOY%3D&reserved=0>

REMINDER: EMBRIO Acknowledgement for Scholarly Papers and Posters.
For EMBRIO related research publications, NSF requires acknowledgement of EMBRIO NSF funding for our Institute to claim the work in our reporting back to NSF. Please include the following acknowledgement in your journal and conference papers and posters: “This work is based upon efforts supported by EMBRIO Institute, contract #2120200, a National Science Foundation (NSF) Biology Integration Institute.”

UPCOMING DEADLINES, IMPORTANT DATES, OPPORTUNITIES & INFO

EMBRIO All-hands Meeting Schedule, Monday’s 3-4pm ET.
Zoom Link: https://purdue-edu.zoom.us/j/97946412458?pwd=YUurFKck0n1am07eA7b0O0TVKsVwpC.1&from=addon<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpurdue-edu.zoom.us%2Fj%2F97946412458%3Fpwd%3DYUurFKck0n1am07eA7b0O0TVKsVwpC.1%26from%3Daddon&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923566416%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=uE3C52buTxYnGG2jnlZxfTFgluNy6dpne41hggPQxt8%3D&reserved=0>

Previous All Hands Recordings<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.com%2Fs%2F48uqgrgoy5ygp1tsj2l3lafoy8ubgkop&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923585229%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=qS%2FhrKoe7YWywCHkGnIy5Os%2FbNmsisGoq1IPDScp%2B6w%3D&reserved=0>

Trainees and collaborators encouraged to co-present during the Thrust seminars this semester.

Month
Day
Spring Semester 2025
Jan
13
 Denise Driscoll, Purdue (ABIDES Invited Scholar)
Jan
27
Scott Howard, Notre Dame
Feb
10
Krishna Jayant Lab; Thrust 1A
Feb
24
Janice Evans Lab; Thrust 1B
Mar
10
Qing Deng Lab; Thrust 3B
Mar
24
Jeremiah Zartman Lab; Thrust 2B
Apr
7
Chris Staiger and Anjali Iyer-Pascuzzi Labs; Thrust 2A
Apr
21
Mary Mullins Lab; Thrust 3A
May
5
Stephanie Gardner Lab; Thrust 4
May
19
Ale Magana Lab; Thrust 4

April 11, 2025. Q-Bio Symposium, University of Notre Dame. (details below)

April 22, 2025. Sloan Mentorship Community of Practice Virtual Workshop: Rubrics for Holistic Competitive Decisions, with leadership from EMBRIO Investigator Stephanie Gardner. Please see the attached flyer for details and QR code for the zoom link, but consider registering in advance for this meeting: https://purdue-edu.zoom.us/meeting/register/UvqM_3QWTdacKoLsbGk0Sg   After registering, you will receive a confirmation email containing information about joining the meeting.

May 12-16, 2025 Cytoskeleton Modeling Workshop, NC State (Details below)
June 9-13, 2025. EMBRIO Summer School and Annual Meeting, Purdue University. Additional Details forthcoming. See the attached for Best Paper and Best Scientific Figure Competitions.
July 9-13, 2025. International Zebrafish Conference<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.izfs.org%2Feducation%2F19izfc&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923601405%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=RAVBPM%2BP7esF6KPrd6Vru6z0UlXIy28UjVmZUmQCdfY%3D&reserved=0>. Madison, WI, USA.

Quantitative Biology Symposium
Joint Event: Q-Bio at ND + EMBRIO
Location: University of Notre Dame Campus (Hesburg Library and Jordan Hall of Science)
Date: Friday, April 11th. RSVP by this Friday, March 28th.
Schedule<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fqbio.nd.edu%2Fevents%2F2025%2F04%2F11%2Fq-bio-nd-embrio-joint-symposium%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923619803%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=fiyfCui%2FGs%2BASLPUjc1OAu5EDiA1rYI5xJEf4cfB2QI%3D&reserved=0>     RSVP<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.google.com%2Fforms%2Fd%2Fe%2F1FAIpQLSd22Fw8gUkR3MUWZeWxfAQlIGTHoVxQZoA5a1zF9droemvQSg%2Fviewform&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923637290%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=HW9e4KqF8Kq7FPeIOe2Lm5yD5m69%2F4%2FV16Ic4ZzNKxU%3D&reserved=0>

On behalf of the Q-Bio at ND community, we are excited to invite you to the upcoming Quantitative Biology Symposium, a joint event with EMBRIO, taking place on Friday, April 11, 2025, on Notre Dame's Campus in the Carey Auditorium & the Jordan Hall of Science, from 8:30 AM to 7:00 PM.
This full-day symposium offers a valuable opportunity to connect ND and EMBRIO researchers, exchange insights, and foster collaborations in quantitative and computational biology. The event will feature engaging research discussions, networking opportunities, and complimentary meals throughout the day. If you are interested in any of the following research themes, please join us: Mathematical and Theoretical Biology, Computational Biology and Bioinformatics, Biostatistics, Population Biology and Epidemiology, Systems and Synthetic Biology

Event Highlights:

  *   Opening remarks by Dean Santiago Schnell<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fschnell-lab.nd.edu%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923653970%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=MrIC6jQ9YHwn9rpDD%2BkNyeI5%2FEPcD6tP0mQ1VOfbcHI%3D&reserved=0>
  *   Research talks by ND and EMBRIO/Purdue faculty
  *   Trainee short talks featuring research from graduate students, postdocs, and research scientists
  *   Poster presentation session (open to all research topics—postdocs, graduate, and undergraduate students encouraged to participate!)
  *   Informal networking sessions to build connections within and across research communities

We’d love to have you join us! If you’re interested, please RSVP here<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.google.com%2Fforms%2Fd%2Fe%2F1FAIpQLSd22Fw8gUkR3MUWZeWxfAQlIGTHoVxQZoA5a1zF9droemvQSg%2Fviewform%3Fusp%3Dheader&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923668692%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=C5SpS9xWBr0mzkt62YvvO8sClbNJn%2B3sof%2BLyEgpQ0w%3D&reserved=0>
For additional details, visit qbio.nd.edu<https://nam04.safelinks.protection.outlook.com/?url=http%3A%2F%2Fqbio.nd.edu%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923682630%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=VyW432Z2T7TvfvSpicC8xE2O01wVwBsA4jTPscVlQag%3D&reserved=0> for event details<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fqbio.nd.edu%2Fevents%2F2025%2F04%2F11%2Fq-bio-nd-embrio-joint-symposium%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923697109%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=xXJDDFDh12U1Wq9gCKe56zj3uoAV3teMnPpuPi8nW%2BU%3D&reserved=0> or feel free to reach out to sraha at nd.edu or dgazzo at nd.edu with any questions.
Looking forward to a day of exciting discussions and collaboration!
Cheers,
David

Additional Gatherings
On the evening of Thursday, April 10, we are tentatively planning to host an informal dinner gathering for EMBRIO investigators and key personnel, with further details to be shared closer to the event. For trainees arriving the night before, we will also hold an informal gathering option as well!

Full Links
RSVP: https://docs.google.com/forms/d/e/1FAIpQLSd22Fw8gUkR3MUWZeWxfAQlIGTHoVxQZoA5a1zF9droemvQSg/viewform?usp=header<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdocs.google.com%2Fforms%2Fd%2Fe%2F1FAIpQLSd22Fw8gUkR3MUWZeWxfAQlIGTHoVxQZoA5a1zF9droemvQSg%2Fviewform%3Fusp%3Dheader&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923712170%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=bmJcfr6%2BP4%2BoXRmIQHblgLA2nI1Lq1l6%2Fsyx5KBs6PE%3D&reserved=0>
Event Details: https://qbio.nd.edu/events/2025/04/11/q-bio-nd-embrio-joint-symposium/<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fqbio.nd.edu%2Fevents%2F2025%2F04%2F11%2Fq-bio-nd-embrio-joint-symposium%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923724585%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=PMo0T8aK6Zsvip8wCwfE6XIyTj1pzmwQpXA%2B22TXIKQ%3D&reserved=0>

Cytoskeleton Modeling Workshop, NC State
From: Julio Monti Belmonte <jbelmon2 at ncsu.edu<mailto:jbelmon2 at ncsu.edu>>
Date: Thu, Feb 6, 2025, 4:38 PM
Subject: Cytoskeleton Modelling Workshop May 12-16 at NC State
To: <cytosimworkshop at ncsu.edu<mailto:cytosimworkshop at ncsu.edu>>

Dear Colleagues,

We are pleased to announce the first in-person Cytoskeleton Modeling Workshop in the United States, utilizing the CytoSim<https://nam04.safelinks.protection.outlook.com/?url=http%3A%2F%2Fcytosim.org%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923737207%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=fZps9MzkiKHMQ5bmnb1GZMxmqJVBfDT5NOJpRmSzE0s%3D&reserved=0> software<https://nam04.safelinks.protection.outlook.com/?url=http%3A%2F%2Fcytosim.org%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923749584%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=ZHDx%2BTzUPFM%2Fr1cdhcYDtwUgy7HyEysuplL0iqrUM%2FY%3D&reserved=0>. This workshop will be held at NC State, Raleigh, NC<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcytosimworkshop.wordpress.ncsu.edu%2Fvenue-accommodation%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923763359%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=XAqQ5Fha4mS3OmkjS7M7mgJlESrOlpSDh%2BwR8p1SSoQ%3D&reserved=0>, from May 12-16, 2025.

Over the course of five days, the workshop will feature a combination of lectures<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcytosimworkshop.wordpress.ncsu.edu%2Fprogram-tentative%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923780906%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=ISL1Vug36%2Bq28hys5q2jbud9ry6%2FDumpznfbYifsTS4%3D&reserved=0>, guest talks<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcytosimworkshop.wordpress.ncsu.edu%2Finstructors-speakers%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923795642%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=Nt9Zr5zAJHknpjI1zKnT09N9nixTSquAzjKVqjwdrL8%3D&reserved=0>, and hands-on hackathon sessions. This workshop is open to individuals from a wide range of backgrounds, including Physics, Biology, Chemistry, and related fields, as well as participants at all career stages (undergraduate students to faculty). No prior programming experience is required.

Key Learning Outcomes:
 - How to download, install, and run CytoSim simulations on your own machine
 - An overview of the biophysical properties and dynamics of various cytoskeletal systems and their components
 - An introduction to all the features and functionalities available in CytoSim
 - Techniques and scripts for extracting and analyzing simulation data
 - Methods for performing parameter scans and running simulations on computer clusters

In the final days of the workshop, we will host hackathon sessions, where participants can apply the knowledge gained throughout the workshop to work on projects of their choosing, either independently or in groups, with the support of our instructors: François Nédélec<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.slcu.cam.ac.uk%2Fpeople%2Ffrancois-nedelec&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923808533%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=ounnvL%2FkDNd6E%2FTETZAup2Diu34j5ScS1G6bZPDpDHc%3D&reserved=0>, Daniel Cortes<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcorteslab.biol.vt.edu%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923820704%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=hKByEZhvw%2FJM5vgTsSF%2FntxTDjvtkKGYVlP1E2YA1Zc%3D&reserved=0> and Julio Belmonte<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbelmonte.wordpress.ncsu.edu%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062923832718%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=nWSJF%2FflGt2Xrm9R7p%2FL6GffLAV0R4025CYkwVjUhPc%3D&reserved=0>.

Additional Information:
 - There are no registration<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcytosimworkshop.wordpress.ncsu.edu%2Fregistration%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062924105056%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=Ss05u9V%2Be3ixQm3QO3cMzTGBRhuyiXVaSyBWjU8JcFc%3D&reserved=0> fees for this workshop; however, participants are responsible for their own travel and lodging expenses. Discounted accommodation rates are available at a nearby university dormitory<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcytosimworkshop.wordpress.ncsu.edu%2Fbecton-dormitory-hall%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062924120189%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=2ACtlxA8O7taywh%2BpXBhVC1etX3H8jNJH181aeSlBHk%3D&reserved=0>.
- Lunch and coffee will be provided throughout the workshop.

For more details and to register, please visit the workshop website:
https://cytosimworkshop.wordpress.ncsu.edu<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcytosimworkshop.wordpress.ncsu.edu%2F&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062924135898%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=Wvwm%2FihLGAHJxVJz%2Bs6%2F1%2FWahmQSdJU9f%2FzWhqq4k70%3D&reserved=0>

Registration Deadline: March 30, 2025
Given limited space, applicants will be notified by early April regarding their acceptance to the workshop.

We encourage you to share this announcement with any colleagues who may be interested in attending.

We look forward to welcoming you to Raleigh in May!

Best regards,
Julio M. Belmonte
Assistant Professor
Department of Physics
NC State University

Awards
Congrats to co-first authors Mayesha Mim and Nilay Kumar, along with EMBRIO co-authors from the Zartman lab, for being awarded the Outstanding CBE Department Paper of 2024 at Notre Dame for work on Piezo in Cell Reports:

Mim M.S., Kumar, N., Levis,M..,  Unger, M.F., Miranda,G., Gazzo, D., Robinett,T., and  Zartman, J.J. (2024) Piezo regulates epithelial topology and promotes precision in organ size control, Cell Reports, 43, Issue 7,114398, ISSN 2211-1247, https://doi.org/10.1016/j.celrep.2024.114398<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdoi.org%2F10.1016%2Fj.celrep.2024.114398&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062924149580%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=GaGSqkQJbxuywhfLVoSb627%2FO2fE92ZK3BRB%2FJSePHM%3D&reserved=0>

New Lab Members?
Did you recently have new students or staff members join your EMBRIO projects? We want to add them to the listserv, Box account, demographics survey, and Personnel List for ensuring their inclusion in communications and participation. If they are not already on our Personnel spreadsheet<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapp.box.com%2Fs%2Fh6eez5tmit1m3k9oih03phnbm0pb5iv4&data=05%7C02%7Cembrio-list%40ecn.purdue.edu%7Ccfe0e2b0dc9f4d6690a508dd6d72cd50%7C4130bd397c53419cb1e58758d6d63f21%7C0%7C0%7C638787062924162257%7CUnknown%7CTWFpbGZsb3d8eyJFbXB0eU1hcGkiOnRydWUsIlYiOiIwLjAuMDAwMCIsIlAiOiJXaW4zMiIsIkFOIjoiTWFpbCIsIldUIjoyfQ%3D%3D%7C0%7C%7C%7C&sdata=9X0VY5VBoyAh77HFyhBGTk4Pg%2FG11RJmx4TuM%2FKyqzI%3D&reserved=0> , or they have graduated, let Brent know their names and email contacts (laddb at purdue.edu<mailto:laddb at purdue.edu> )

Brent T. Ladd, Senior Research Program Manager, EMBRIO Institute<https://www.purdue.edu/research/embrio/>
Weldon School of Biomedical Engineering, Purdue University
Office: Hall for Discovery Learning and Research, Ste. 203
207 S. Martin Jischke Drive
West Lafayette, IN 47907
laddb at purdue.edu

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